2 * Note: this file was generated by the Gromacs c kernel generator.
4 * This source code is part of
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28 #include "../nb_kernel.h"
29 #include "types/simple.h"
34 * Gromacs nonbonded kernel: nb_kernel_ElecRFCut_VdwNone_GeomW3P1_VF_c
35 * Electrostatics interaction: ReactionField
36 * VdW interaction: None
37 * Geometry: Water3-Particle
38 * Calculate force/pot: PotentialAndForce
41 nb_kernel_ElecRFCut_VdwNone_GeomW3P1_VF_c
42 (t_nblist * gmx_restrict nlist,
43 rvec * gmx_restrict xx,
44 rvec * gmx_restrict ff,
45 t_forcerec * gmx_restrict fr,
46 t_mdatoms * gmx_restrict mdatoms,
47 nb_kernel_data_t * gmx_restrict kernel_data,
48 t_nrnb * gmx_restrict nrnb)
50 int i_shift_offset,i_coord_offset,j_coord_offset;
51 int j_index_start,j_index_end;
52 int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
53 real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
54 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
55 real *shiftvec,*fshift,*x,*f;
57 real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
59 real ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
61 real ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
63 real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
64 real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
65 real dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10,cexp1_10,cexp2_10;
66 real dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20,cexp1_20,cexp2_20;
67 real velec,felec,velecsum,facel,crf,krf,krf2;
75 jindex = nlist->jindex;
77 shiftidx = nlist->shift;
79 shiftvec = fr->shift_vec[0];
80 fshift = fr->fshift[0];
82 charge = mdatoms->chargeA;
87 /* Setup water-specific parameters */
89 iq0 = facel*charge[inr+0];
90 iq1 = facel*charge[inr+1];
91 iq2 = facel*charge[inr+2];
93 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
94 rcutoff = fr->rcoulomb;
95 rcutoff2 = rcutoff*rcutoff;
100 /* Start outer loop over neighborlists */
101 for(iidx=0; iidx<nri; iidx++)
103 /* Load shift vector for this list */
104 i_shift_offset = DIM*shiftidx[iidx];
105 shX = shiftvec[i_shift_offset+XX];
106 shY = shiftvec[i_shift_offset+YY];
107 shZ = shiftvec[i_shift_offset+ZZ];
109 /* Load limits for loop over neighbors */
110 j_index_start = jindex[iidx];
111 j_index_end = jindex[iidx+1];
113 /* Get outer coordinate index */
115 i_coord_offset = DIM*inr;
117 /* Load i particle coords and add shift vector */
118 ix0 = shX + x[i_coord_offset+DIM*0+XX];
119 iy0 = shY + x[i_coord_offset+DIM*0+YY];
120 iz0 = shZ + x[i_coord_offset+DIM*0+ZZ];
121 ix1 = shX + x[i_coord_offset+DIM*1+XX];
122 iy1 = shY + x[i_coord_offset+DIM*1+YY];
123 iz1 = shZ + x[i_coord_offset+DIM*1+ZZ];
124 ix2 = shX + x[i_coord_offset+DIM*2+XX];
125 iy2 = shY + x[i_coord_offset+DIM*2+YY];
126 iz2 = shZ + x[i_coord_offset+DIM*2+ZZ];
138 /* Reset potential sums */
141 /* Start inner kernel loop */
142 for(jidx=j_index_start; jidx<j_index_end; jidx++)
144 /* Get j neighbor index, and coordinate index */
146 j_coord_offset = DIM*jnr;
148 /* load j atom coordinates */
149 jx0 = x[j_coord_offset+DIM*0+XX];
150 jy0 = x[j_coord_offset+DIM*0+YY];
151 jz0 = x[j_coord_offset+DIM*0+ZZ];
153 /* Calculate displacement vector */
164 /* Calculate squared distance and things based on it */
165 rsq00 = dx00*dx00+dy00*dy00+dz00*dz00;
166 rsq10 = dx10*dx10+dy10*dy10+dz10*dz10;
167 rsq20 = dx20*dx20+dy20*dy20+dz20*dz20;
169 rinv00 = gmx_invsqrt(rsq00);
170 rinv10 = gmx_invsqrt(rsq10);
171 rinv20 = gmx_invsqrt(rsq20);
173 rinvsq00 = rinv00*rinv00;
174 rinvsq10 = rinv10*rinv10;
175 rinvsq20 = rinv20*rinv20;
177 /* Load parameters for j particles */
180 /**************************
181 * CALCULATE INTERACTIONS *
182 **************************/
189 /* REACTION-FIELD ELECTROSTATICS */
190 velec = qq00*(rinv00+krf*rsq00-crf);
191 felec = qq00*(rinv00*rinvsq00-krf2);
193 /* Update potential sums from outer loop */
198 /* Calculate temporary vectorial force */
203 /* Update vectorial force */
207 f[j_coord_offset+DIM*0+XX] -= tx;
208 f[j_coord_offset+DIM*0+YY] -= ty;
209 f[j_coord_offset+DIM*0+ZZ] -= tz;
213 /**************************
214 * CALCULATE INTERACTIONS *
215 **************************/
222 /* REACTION-FIELD ELECTROSTATICS */
223 velec = qq10*(rinv10+krf*rsq10-crf);
224 felec = qq10*(rinv10*rinvsq10-krf2);
226 /* Update potential sums from outer loop */
231 /* Calculate temporary vectorial force */
236 /* Update vectorial force */
240 f[j_coord_offset+DIM*0+XX] -= tx;
241 f[j_coord_offset+DIM*0+YY] -= ty;
242 f[j_coord_offset+DIM*0+ZZ] -= tz;
246 /**************************
247 * CALCULATE INTERACTIONS *
248 **************************/
255 /* REACTION-FIELD ELECTROSTATICS */
256 velec = qq20*(rinv20+krf*rsq20-crf);
257 felec = qq20*(rinv20*rinvsq20-krf2);
259 /* Update potential sums from outer loop */
264 /* Calculate temporary vectorial force */
269 /* Update vectorial force */
273 f[j_coord_offset+DIM*0+XX] -= tx;
274 f[j_coord_offset+DIM*0+YY] -= ty;
275 f[j_coord_offset+DIM*0+ZZ] -= tz;
279 /* Inner loop uses 96 flops */
281 /* End of innermost loop */
284 f[i_coord_offset+DIM*0+XX] += fix0;
285 f[i_coord_offset+DIM*0+YY] += fiy0;
286 f[i_coord_offset+DIM*0+ZZ] += fiz0;
290 f[i_coord_offset+DIM*1+XX] += fix1;
291 f[i_coord_offset+DIM*1+YY] += fiy1;
292 f[i_coord_offset+DIM*1+ZZ] += fiz1;
296 f[i_coord_offset+DIM*2+XX] += fix2;
297 f[i_coord_offset+DIM*2+YY] += fiy2;
298 f[i_coord_offset+DIM*2+ZZ] += fiz2;
302 fshift[i_shift_offset+XX] += tx;
303 fshift[i_shift_offset+YY] += ty;
304 fshift[i_shift_offset+ZZ] += tz;
307 /* Update potential energies */
308 kernel_data->energygrp_elec[ggid] += velecsum;
310 /* Increment number of inner iterations */
311 inneriter += j_index_end - j_index_start;
313 /* Outer loop uses 31 flops */
316 /* Increment number of outer iterations */
319 /* Update outer/inner flops */
321 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3_VF,outeriter*31 + inneriter*96);
324 * Gromacs nonbonded kernel: nb_kernel_ElecRFCut_VdwNone_GeomW3P1_F_c
325 * Electrostatics interaction: ReactionField
326 * VdW interaction: None
327 * Geometry: Water3-Particle
328 * Calculate force/pot: Force
331 nb_kernel_ElecRFCut_VdwNone_GeomW3P1_F_c
332 (t_nblist * gmx_restrict nlist,
333 rvec * gmx_restrict xx,
334 rvec * gmx_restrict ff,
335 t_forcerec * gmx_restrict fr,
336 t_mdatoms * gmx_restrict mdatoms,
337 nb_kernel_data_t * gmx_restrict kernel_data,
338 t_nrnb * gmx_restrict nrnb)
340 int i_shift_offset,i_coord_offset,j_coord_offset;
341 int j_index_start,j_index_end;
342 int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
343 real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
344 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
345 real *shiftvec,*fshift,*x,*f;
347 real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
349 real ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
351 real ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
353 real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
354 real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
355 real dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10,cexp1_10,cexp2_10;
356 real dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20,cexp1_20,cexp2_20;
357 real velec,felec,velecsum,facel,crf,krf,krf2;
365 jindex = nlist->jindex;
367 shiftidx = nlist->shift;
369 shiftvec = fr->shift_vec[0];
370 fshift = fr->fshift[0];
372 charge = mdatoms->chargeA;
377 /* Setup water-specific parameters */
378 inr = nlist->iinr[0];
379 iq0 = facel*charge[inr+0];
380 iq1 = facel*charge[inr+1];
381 iq2 = facel*charge[inr+2];
383 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
384 rcutoff = fr->rcoulomb;
385 rcutoff2 = rcutoff*rcutoff;
390 /* Start outer loop over neighborlists */
391 for(iidx=0; iidx<nri; iidx++)
393 /* Load shift vector for this list */
394 i_shift_offset = DIM*shiftidx[iidx];
395 shX = shiftvec[i_shift_offset+XX];
396 shY = shiftvec[i_shift_offset+YY];
397 shZ = shiftvec[i_shift_offset+ZZ];
399 /* Load limits for loop over neighbors */
400 j_index_start = jindex[iidx];
401 j_index_end = jindex[iidx+1];
403 /* Get outer coordinate index */
405 i_coord_offset = DIM*inr;
407 /* Load i particle coords and add shift vector */
408 ix0 = shX + x[i_coord_offset+DIM*0+XX];
409 iy0 = shY + x[i_coord_offset+DIM*0+YY];
410 iz0 = shZ + x[i_coord_offset+DIM*0+ZZ];
411 ix1 = shX + x[i_coord_offset+DIM*1+XX];
412 iy1 = shY + x[i_coord_offset+DIM*1+YY];
413 iz1 = shZ + x[i_coord_offset+DIM*1+ZZ];
414 ix2 = shX + x[i_coord_offset+DIM*2+XX];
415 iy2 = shY + x[i_coord_offset+DIM*2+YY];
416 iz2 = shZ + x[i_coord_offset+DIM*2+ZZ];
428 /* Start inner kernel loop */
429 for(jidx=j_index_start; jidx<j_index_end; jidx++)
431 /* Get j neighbor index, and coordinate index */
433 j_coord_offset = DIM*jnr;
435 /* load j atom coordinates */
436 jx0 = x[j_coord_offset+DIM*0+XX];
437 jy0 = x[j_coord_offset+DIM*0+YY];
438 jz0 = x[j_coord_offset+DIM*0+ZZ];
440 /* Calculate displacement vector */
451 /* Calculate squared distance and things based on it */
452 rsq00 = dx00*dx00+dy00*dy00+dz00*dz00;
453 rsq10 = dx10*dx10+dy10*dy10+dz10*dz10;
454 rsq20 = dx20*dx20+dy20*dy20+dz20*dz20;
456 rinv00 = gmx_invsqrt(rsq00);
457 rinv10 = gmx_invsqrt(rsq10);
458 rinv20 = gmx_invsqrt(rsq20);
460 rinvsq00 = rinv00*rinv00;
461 rinvsq10 = rinv10*rinv10;
462 rinvsq20 = rinv20*rinv20;
464 /* Load parameters for j particles */
467 /**************************
468 * CALCULATE INTERACTIONS *
469 **************************/
476 /* REACTION-FIELD ELECTROSTATICS */
477 felec = qq00*(rinv00*rinvsq00-krf2);
481 /* Calculate temporary vectorial force */
486 /* Update vectorial force */
490 f[j_coord_offset+DIM*0+XX] -= tx;
491 f[j_coord_offset+DIM*0+YY] -= ty;
492 f[j_coord_offset+DIM*0+ZZ] -= tz;
496 /**************************
497 * CALCULATE INTERACTIONS *
498 **************************/
505 /* REACTION-FIELD ELECTROSTATICS */
506 felec = qq10*(rinv10*rinvsq10-krf2);
510 /* Calculate temporary vectorial force */
515 /* Update vectorial force */
519 f[j_coord_offset+DIM*0+XX] -= tx;
520 f[j_coord_offset+DIM*0+YY] -= ty;
521 f[j_coord_offset+DIM*0+ZZ] -= tz;
525 /**************************
526 * CALCULATE INTERACTIONS *
527 **************************/
534 /* REACTION-FIELD ELECTROSTATICS */
535 felec = qq20*(rinv20*rinvsq20-krf2);
539 /* Calculate temporary vectorial force */
544 /* Update vectorial force */
548 f[j_coord_offset+DIM*0+XX] -= tx;
549 f[j_coord_offset+DIM*0+YY] -= ty;
550 f[j_coord_offset+DIM*0+ZZ] -= tz;
554 /* Inner loop uses 81 flops */
556 /* End of innermost loop */
559 f[i_coord_offset+DIM*0+XX] += fix0;
560 f[i_coord_offset+DIM*0+YY] += fiy0;
561 f[i_coord_offset+DIM*0+ZZ] += fiz0;
565 f[i_coord_offset+DIM*1+XX] += fix1;
566 f[i_coord_offset+DIM*1+YY] += fiy1;
567 f[i_coord_offset+DIM*1+ZZ] += fiz1;
571 f[i_coord_offset+DIM*2+XX] += fix2;
572 f[i_coord_offset+DIM*2+YY] += fiy2;
573 f[i_coord_offset+DIM*2+ZZ] += fiz2;
577 fshift[i_shift_offset+XX] += tx;
578 fshift[i_shift_offset+YY] += ty;
579 fshift[i_shift_offset+ZZ] += tz;
581 /* Increment number of inner iterations */
582 inneriter += j_index_end - j_index_start;
584 /* Outer loop uses 30 flops */
587 /* Increment number of outer iterations */
590 /* Update outer/inner flops */
592 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3_F,outeriter*30 + inneriter*81);