Fix component for libcudart
[alexxy/gromacs.git] / src / gmxlib / nonbonded / nb_kernel_c / nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
1 /*
2  * Note: this file was generated by the Gromacs c kernel generator.
3  *
4  *                This source code is part of
5  *
6  *                 G   R   O   M   A   C   S
7  *
8  * Copyright (c) 2001-2012, The GROMACS Development Team
9  *
10  * Gromacs is a library for molecular simulation and trajectory analysis,
11  * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12  * a full list of developers and information, check out http://www.gromacs.org
13  *
14  * This program is free software; you can redistribute it and/or modify it under
15  * the terms of the GNU Lesser General Public License as published by the Free
16  * Software Foundation; either version 2 of the License, or (at your option) any
17  * later version.
18  *
19  * To help fund GROMACS development, we humbly ask that you cite
20  * the papers people have written on it - you can find them on the website.
21  */
22 #ifdef HAVE_CONFIG_H
23 #include <config.h>
24 #endif
25
26 #include <math.h>
27
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
30 #include "vec.h"
31 #include "nrnb.h"
32
33 /*
34  * Gromacs nonbonded kernel:   nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_VF_c
35  * Electrostatics interaction: ReactionField
36  * VdW interaction:            LennardJones
37  * Geometry:                   Water4-Water4
38  * Calculate force/pot:        PotentialAndForce
39  */
40 void
41 nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_VF_c
42                     (t_nblist * gmx_restrict                nlist,
43                      rvec * gmx_restrict                    xx,
44                      rvec * gmx_restrict                    ff,
45                      t_forcerec * gmx_restrict              fr,
46                      t_mdatoms * gmx_restrict               mdatoms,
47                      nb_kernel_data_t * gmx_restrict        kernel_data,
48                      t_nrnb * gmx_restrict                  nrnb)
49 {
50     int              i_shift_offset,i_coord_offset,j_coord_offset;
51     int              j_index_start,j_index_end;
52     int              nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
53     real             shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
54     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
55     real             *shiftvec,*fshift,*x,*f;
56     int              vdwioffset0;
57     real             ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
58     int              vdwioffset1;
59     real             ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
60     int              vdwioffset2;
61     real             ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
62     int              vdwioffset3;
63     real             ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
64     int              vdwjidx0;
65     real             jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
66     int              vdwjidx1;
67     real             jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
68     int              vdwjidx2;
69     real             jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
70     int              vdwjidx3;
71     real             jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
72     real             dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
73     real             dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11,cexp1_11,cexp2_11;
74     real             dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12,cexp1_12,cexp2_12;
75     real             dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13,cexp1_13,cexp2_13;
76     real             dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21,cexp1_21,cexp2_21;
77     real             dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22,cexp1_22,cexp2_22;
78     real             dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23,cexp1_23,cexp2_23;
79     real             dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31,cexp1_31,cexp2_31;
80     real             dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32,cexp1_32,cexp2_32;
81     real             dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33,cexp1_33,cexp2_33;
82     real             velec,felec,velecsum,facel,crf,krf,krf2;
83     real             *charge;
84     int              nvdwtype;
85     real             rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
86     int              *vdwtype;
87     real             *vdwparam;
88
89     x                = xx[0];
90     f                = ff[0];
91
92     nri              = nlist->nri;
93     iinr             = nlist->iinr;
94     jindex           = nlist->jindex;
95     jjnr             = nlist->jjnr;
96     shiftidx         = nlist->shift;
97     gid              = nlist->gid;
98     shiftvec         = fr->shift_vec[0];
99     fshift           = fr->fshift[0];
100     facel            = fr->epsfac;
101     charge           = mdatoms->chargeA;
102     krf              = fr->ic->k_rf;
103     krf2             = krf*2.0;
104     crf              = fr->ic->c_rf;
105     nvdwtype         = fr->ntype;
106     vdwparam         = fr->nbfp;
107     vdwtype          = mdatoms->typeA;
108
109     /* Setup water-specific parameters */
110     inr              = nlist->iinr[0];
111     iq1              = facel*charge[inr+1];
112     iq2              = facel*charge[inr+2];
113     iq3              = facel*charge[inr+3];
114     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
115
116     jq1              = charge[inr+1];
117     jq2              = charge[inr+2];
118     jq3              = charge[inr+3];
119     vdwjidx0         = 2*vdwtype[inr+0];
120     c6_00            = vdwparam[vdwioffset0+vdwjidx0];
121     c12_00           = vdwparam[vdwioffset0+vdwjidx0+1];
122     qq11             = iq1*jq1;
123     qq12             = iq1*jq2;
124     qq13             = iq1*jq3;
125     qq21             = iq2*jq1;
126     qq22             = iq2*jq2;
127     qq23             = iq2*jq3;
128     qq31             = iq3*jq1;
129     qq32             = iq3*jq2;
130     qq33             = iq3*jq3;
131
132     /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
133     rcutoff          = fr->rcoulomb;
134     rcutoff2         = rcutoff*rcutoff;
135
136     sh_vdw_invrcut6  = fr->ic->sh_invrc6;
137     rvdw             = fr->rvdw;
138
139     outeriter        = 0;
140     inneriter        = 0;
141
142     /* Start outer loop over neighborlists */
143     for(iidx=0; iidx<nri; iidx++)
144     {
145         /* Load shift vector for this list */
146         i_shift_offset   = DIM*shiftidx[iidx];
147         shX              = shiftvec[i_shift_offset+XX];
148         shY              = shiftvec[i_shift_offset+YY];
149         shZ              = shiftvec[i_shift_offset+ZZ];
150
151         /* Load limits for loop over neighbors */
152         j_index_start    = jindex[iidx];
153         j_index_end      = jindex[iidx+1];
154
155         /* Get outer coordinate index */
156         inr              = iinr[iidx];
157         i_coord_offset   = DIM*inr;
158
159         /* Load i particle coords and add shift vector */
160         ix0              = shX + x[i_coord_offset+DIM*0+XX];
161         iy0              = shY + x[i_coord_offset+DIM*0+YY];
162         iz0              = shZ + x[i_coord_offset+DIM*0+ZZ];
163         ix1              = shX + x[i_coord_offset+DIM*1+XX];
164         iy1              = shY + x[i_coord_offset+DIM*1+YY];
165         iz1              = shZ + x[i_coord_offset+DIM*1+ZZ];
166         ix2              = shX + x[i_coord_offset+DIM*2+XX];
167         iy2              = shY + x[i_coord_offset+DIM*2+YY];
168         iz2              = shZ + x[i_coord_offset+DIM*2+ZZ];
169         ix3              = shX + x[i_coord_offset+DIM*3+XX];
170         iy3              = shY + x[i_coord_offset+DIM*3+YY];
171         iz3              = shZ + x[i_coord_offset+DIM*3+ZZ];
172
173         fix0             = 0.0;
174         fiy0             = 0.0;
175         fiz0             = 0.0;
176         fix1             = 0.0;
177         fiy1             = 0.0;
178         fiz1             = 0.0;
179         fix2             = 0.0;
180         fiy2             = 0.0;
181         fiz2             = 0.0;
182         fix3             = 0.0;
183         fiy3             = 0.0;
184         fiz3             = 0.0;
185
186         /* Reset potential sums */
187         velecsum         = 0.0;
188         vvdwsum          = 0.0;
189
190         /* Start inner kernel loop */
191         for(jidx=j_index_start; jidx<j_index_end; jidx++)
192         {
193             /* Get j neighbor index, and coordinate index */
194             jnr              = jjnr[jidx];
195             j_coord_offset   = DIM*jnr;
196
197             /* load j atom coordinates */
198             jx0              = x[j_coord_offset+DIM*0+XX];
199             jy0              = x[j_coord_offset+DIM*0+YY];
200             jz0              = x[j_coord_offset+DIM*0+ZZ];
201             jx1              = x[j_coord_offset+DIM*1+XX];
202             jy1              = x[j_coord_offset+DIM*1+YY];
203             jz1              = x[j_coord_offset+DIM*1+ZZ];
204             jx2              = x[j_coord_offset+DIM*2+XX];
205             jy2              = x[j_coord_offset+DIM*2+YY];
206             jz2              = x[j_coord_offset+DIM*2+ZZ];
207             jx3              = x[j_coord_offset+DIM*3+XX];
208             jy3              = x[j_coord_offset+DIM*3+YY];
209             jz3              = x[j_coord_offset+DIM*3+ZZ];
210
211             /* Calculate displacement vector */
212             dx00             = ix0 - jx0;
213             dy00             = iy0 - jy0;
214             dz00             = iz0 - jz0;
215             dx11             = ix1 - jx1;
216             dy11             = iy1 - jy1;
217             dz11             = iz1 - jz1;
218             dx12             = ix1 - jx2;
219             dy12             = iy1 - jy2;
220             dz12             = iz1 - jz2;
221             dx13             = ix1 - jx3;
222             dy13             = iy1 - jy3;
223             dz13             = iz1 - jz3;
224             dx21             = ix2 - jx1;
225             dy21             = iy2 - jy1;
226             dz21             = iz2 - jz1;
227             dx22             = ix2 - jx2;
228             dy22             = iy2 - jy2;
229             dz22             = iz2 - jz2;
230             dx23             = ix2 - jx3;
231             dy23             = iy2 - jy3;
232             dz23             = iz2 - jz3;
233             dx31             = ix3 - jx1;
234             dy31             = iy3 - jy1;
235             dz31             = iz3 - jz1;
236             dx32             = ix3 - jx2;
237             dy32             = iy3 - jy2;
238             dz32             = iz3 - jz2;
239             dx33             = ix3 - jx3;
240             dy33             = iy3 - jy3;
241             dz33             = iz3 - jz3;
242
243             /* Calculate squared distance and things based on it */
244             rsq00            = dx00*dx00+dy00*dy00+dz00*dz00;
245             rsq11            = dx11*dx11+dy11*dy11+dz11*dz11;
246             rsq12            = dx12*dx12+dy12*dy12+dz12*dz12;
247             rsq13            = dx13*dx13+dy13*dy13+dz13*dz13;
248             rsq21            = dx21*dx21+dy21*dy21+dz21*dz21;
249             rsq22            = dx22*dx22+dy22*dy22+dz22*dz22;
250             rsq23            = dx23*dx23+dy23*dy23+dz23*dz23;
251             rsq31            = dx31*dx31+dy31*dy31+dz31*dz31;
252             rsq32            = dx32*dx32+dy32*dy32+dz32*dz32;
253             rsq33            = dx33*dx33+dy33*dy33+dz33*dz33;
254
255             rinv11           = gmx_invsqrt(rsq11);
256             rinv12           = gmx_invsqrt(rsq12);
257             rinv13           = gmx_invsqrt(rsq13);
258             rinv21           = gmx_invsqrt(rsq21);
259             rinv22           = gmx_invsqrt(rsq22);
260             rinv23           = gmx_invsqrt(rsq23);
261             rinv31           = gmx_invsqrt(rsq31);
262             rinv32           = gmx_invsqrt(rsq32);
263             rinv33           = gmx_invsqrt(rsq33);
264
265             rinvsq00         = 1.0/rsq00;
266             rinvsq11         = rinv11*rinv11;
267             rinvsq12         = rinv12*rinv12;
268             rinvsq13         = rinv13*rinv13;
269             rinvsq21         = rinv21*rinv21;
270             rinvsq22         = rinv22*rinv22;
271             rinvsq23         = rinv23*rinv23;
272             rinvsq31         = rinv31*rinv31;
273             rinvsq32         = rinv32*rinv32;
274             rinvsq33         = rinv33*rinv33;
275
276             /**************************
277              * CALCULATE INTERACTIONS *
278              **************************/
279
280             if (rsq00<rcutoff2)
281             {
282
283             /* LENNARD-JONES DISPERSION/REPULSION */
284
285             rinvsix          = rinvsq00*rinvsq00*rinvsq00;
286             vvdw6            = c6_00*rinvsix;
287             vvdw12           = c12_00*rinvsix*rinvsix;
288             vvdw             = (vvdw12 - c12_00*sh_vdw_invrcut6*sh_vdw_invrcut6)*(1.0/12.0) - (vvdw6 - c6_00*sh_vdw_invrcut6)*(1.0/6.0);
289             fvdw             = (vvdw12-vvdw6)*rinvsq00;
290
291             /* Update potential sums from outer loop */
292             vvdwsum         += vvdw;
293
294             fscal            = fvdw;
295
296             /* Calculate temporary vectorial force */
297             tx               = fscal*dx00;
298             ty               = fscal*dy00;
299             tz               = fscal*dz00;
300
301             /* Update vectorial force */
302             fix0            += tx;
303             fiy0            += ty;
304             fiz0            += tz;
305             f[j_coord_offset+DIM*0+XX] -= tx;
306             f[j_coord_offset+DIM*0+YY] -= ty;
307             f[j_coord_offset+DIM*0+ZZ] -= tz;
308
309             }
310
311             /**************************
312              * CALCULATE INTERACTIONS *
313              **************************/
314
315             if (rsq11<rcutoff2)
316             {
317
318             /* REACTION-FIELD ELECTROSTATICS */
319             velec            = qq11*(rinv11+krf*rsq11-crf);
320             felec            = qq11*(rinv11*rinvsq11-krf2);
321
322             /* Update potential sums from outer loop */
323             velecsum        += velec;
324
325             fscal            = felec;
326
327             /* Calculate temporary vectorial force */
328             tx               = fscal*dx11;
329             ty               = fscal*dy11;
330             tz               = fscal*dz11;
331
332             /* Update vectorial force */
333             fix1            += tx;
334             fiy1            += ty;
335             fiz1            += tz;
336             f[j_coord_offset+DIM*1+XX] -= tx;
337             f[j_coord_offset+DIM*1+YY] -= ty;
338             f[j_coord_offset+DIM*1+ZZ] -= tz;
339
340             }
341
342             /**************************
343              * CALCULATE INTERACTIONS *
344              **************************/
345
346             if (rsq12<rcutoff2)
347             {
348
349             /* REACTION-FIELD ELECTROSTATICS */
350             velec            = qq12*(rinv12+krf*rsq12-crf);
351             felec            = qq12*(rinv12*rinvsq12-krf2);
352
353             /* Update potential sums from outer loop */
354             velecsum        += velec;
355
356             fscal            = felec;
357
358             /* Calculate temporary vectorial force */
359             tx               = fscal*dx12;
360             ty               = fscal*dy12;
361             tz               = fscal*dz12;
362
363             /* Update vectorial force */
364             fix1            += tx;
365             fiy1            += ty;
366             fiz1            += tz;
367             f[j_coord_offset+DIM*2+XX] -= tx;
368             f[j_coord_offset+DIM*2+YY] -= ty;
369             f[j_coord_offset+DIM*2+ZZ] -= tz;
370
371             }
372
373             /**************************
374              * CALCULATE INTERACTIONS *
375              **************************/
376
377             if (rsq13<rcutoff2)
378             {
379
380             /* REACTION-FIELD ELECTROSTATICS */
381             velec            = qq13*(rinv13+krf*rsq13-crf);
382             felec            = qq13*(rinv13*rinvsq13-krf2);
383
384             /* Update potential sums from outer loop */
385             velecsum        += velec;
386
387             fscal            = felec;
388
389             /* Calculate temporary vectorial force */
390             tx               = fscal*dx13;
391             ty               = fscal*dy13;
392             tz               = fscal*dz13;
393
394             /* Update vectorial force */
395             fix1            += tx;
396             fiy1            += ty;
397             fiz1            += tz;
398             f[j_coord_offset+DIM*3+XX] -= tx;
399             f[j_coord_offset+DIM*3+YY] -= ty;
400             f[j_coord_offset+DIM*3+ZZ] -= tz;
401
402             }
403
404             /**************************
405              * CALCULATE INTERACTIONS *
406              **************************/
407
408             if (rsq21<rcutoff2)
409             {
410
411             /* REACTION-FIELD ELECTROSTATICS */
412             velec            = qq21*(rinv21+krf*rsq21-crf);
413             felec            = qq21*(rinv21*rinvsq21-krf2);
414
415             /* Update potential sums from outer loop */
416             velecsum        += velec;
417
418             fscal            = felec;
419
420             /* Calculate temporary vectorial force */
421             tx               = fscal*dx21;
422             ty               = fscal*dy21;
423             tz               = fscal*dz21;
424
425             /* Update vectorial force */
426             fix2            += tx;
427             fiy2            += ty;
428             fiz2            += tz;
429             f[j_coord_offset+DIM*1+XX] -= tx;
430             f[j_coord_offset+DIM*1+YY] -= ty;
431             f[j_coord_offset+DIM*1+ZZ] -= tz;
432
433             }
434
435             /**************************
436              * CALCULATE INTERACTIONS *
437              **************************/
438
439             if (rsq22<rcutoff2)
440             {
441
442             /* REACTION-FIELD ELECTROSTATICS */
443             velec            = qq22*(rinv22+krf*rsq22-crf);
444             felec            = qq22*(rinv22*rinvsq22-krf2);
445
446             /* Update potential sums from outer loop */
447             velecsum        += velec;
448
449             fscal            = felec;
450
451             /* Calculate temporary vectorial force */
452             tx               = fscal*dx22;
453             ty               = fscal*dy22;
454             tz               = fscal*dz22;
455
456             /* Update vectorial force */
457             fix2            += tx;
458             fiy2            += ty;
459             fiz2            += tz;
460             f[j_coord_offset+DIM*2+XX] -= tx;
461             f[j_coord_offset+DIM*2+YY] -= ty;
462             f[j_coord_offset+DIM*2+ZZ] -= tz;
463
464             }
465
466             /**************************
467              * CALCULATE INTERACTIONS *
468              **************************/
469
470             if (rsq23<rcutoff2)
471             {
472
473             /* REACTION-FIELD ELECTROSTATICS */
474             velec            = qq23*(rinv23+krf*rsq23-crf);
475             felec            = qq23*(rinv23*rinvsq23-krf2);
476
477             /* Update potential sums from outer loop */
478             velecsum        += velec;
479
480             fscal            = felec;
481
482             /* Calculate temporary vectorial force */
483             tx               = fscal*dx23;
484             ty               = fscal*dy23;
485             tz               = fscal*dz23;
486
487             /* Update vectorial force */
488             fix2            += tx;
489             fiy2            += ty;
490             fiz2            += tz;
491             f[j_coord_offset+DIM*3+XX] -= tx;
492             f[j_coord_offset+DIM*3+YY] -= ty;
493             f[j_coord_offset+DIM*3+ZZ] -= tz;
494
495             }
496
497             /**************************
498              * CALCULATE INTERACTIONS *
499              **************************/
500
501             if (rsq31<rcutoff2)
502             {
503
504             /* REACTION-FIELD ELECTROSTATICS */
505             velec            = qq31*(rinv31+krf*rsq31-crf);
506             felec            = qq31*(rinv31*rinvsq31-krf2);
507
508             /* Update potential sums from outer loop */
509             velecsum        += velec;
510
511             fscal            = felec;
512
513             /* Calculate temporary vectorial force */
514             tx               = fscal*dx31;
515             ty               = fscal*dy31;
516             tz               = fscal*dz31;
517
518             /* Update vectorial force */
519             fix3            += tx;
520             fiy3            += ty;
521             fiz3            += tz;
522             f[j_coord_offset+DIM*1+XX] -= tx;
523             f[j_coord_offset+DIM*1+YY] -= ty;
524             f[j_coord_offset+DIM*1+ZZ] -= tz;
525
526             }
527
528             /**************************
529              * CALCULATE INTERACTIONS *
530              **************************/
531
532             if (rsq32<rcutoff2)
533             {
534
535             /* REACTION-FIELD ELECTROSTATICS */
536             velec            = qq32*(rinv32+krf*rsq32-crf);
537             felec            = qq32*(rinv32*rinvsq32-krf2);
538
539             /* Update potential sums from outer loop */
540             velecsum        += velec;
541
542             fscal            = felec;
543
544             /* Calculate temporary vectorial force */
545             tx               = fscal*dx32;
546             ty               = fscal*dy32;
547             tz               = fscal*dz32;
548
549             /* Update vectorial force */
550             fix3            += tx;
551             fiy3            += ty;
552             fiz3            += tz;
553             f[j_coord_offset+DIM*2+XX] -= tx;
554             f[j_coord_offset+DIM*2+YY] -= ty;
555             f[j_coord_offset+DIM*2+ZZ] -= tz;
556
557             }
558
559             /**************************
560              * CALCULATE INTERACTIONS *
561              **************************/
562
563             if (rsq33<rcutoff2)
564             {
565
566             /* REACTION-FIELD ELECTROSTATICS */
567             velec            = qq33*(rinv33+krf*rsq33-crf);
568             felec            = qq33*(rinv33*rinvsq33-krf2);
569
570             /* Update potential sums from outer loop */
571             velecsum        += velec;
572
573             fscal            = felec;
574
575             /* Calculate temporary vectorial force */
576             tx               = fscal*dx33;
577             ty               = fscal*dy33;
578             tz               = fscal*dz33;
579
580             /* Update vectorial force */
581             fix3            += tx;
582             fiy3            += ty;
583             fiz3            += tz;
584             f[j_coord_offset+DIM*3+XX] -= tx;
585             f[j_coord_offset+DIM*3+YY] -= ty;
586             f[j_coord_offset+DIM*3+ZZ] -= tz;
587
588             }
589
590             /* Inner loop uses 316 flops */
591         }
592         /* End of innermost loop */
593
594         tx = ty = tz = 0;
595         f[i_coord_offset+DIM*0+XX] += fix0;
596         f[i_coord_offset+DIM*0+YY] += fiy0;
597         f[i_coord_offset+DIM*0+ZZ] += fiz0;
598         tx                         += fix0;
599         ty                         += fiy0;
600         tz                         += fiz0;
601         f[i_coord_offset+DIM*1+XX] += fix1;
602         f[i_coord_offset+DIM*1+YY] += fiy1;
603         f[i_coord_offset+DIM*1+ZZ] += fiz1;
604         tx                         += fix1;
605         ty                         += fiy1;
606         tz                         += fiz1;
607         f[i_coord_offset+DIM*2+XX] += fix2;
608         f[i_coord_offset+DIM*2+YY] += fiy2;
609         f[i_coord_offset+DIM*2+ZZ] += fiz2;
610         tx                         += fix2;
611         ty                         += fiy2;
612         tz                         += fiz2;
613         f[i_coord_offset+DIM*3+XX] += fix3;
614         f[i_coord_offset+DIM*3+YY] += fiy3;
615         f[i_coord_offset+DIM*3+ZZ] += fiz3;
616         tx                         += fix3;
617         ty                         += fiy3;
618         tz                         += fiz3;
619         fshift[i_shift_offset+XX]  += tx;
620         fshift[i_shift_offset+YY]  += ty;
621         fshift[i_shift_offset+ZZ]  += tz;
622
623         ggid                        = gid[iidx];
624         /* Update potential energies */
625         kernel_data->energygrp_elec[ggid] += velecsum;
626         kernel_data->energygrp_vdw[ggid] += vvdwsum;
627
628         /* Increment number of inner iterations */
629         inneriter                  += j_index_end - j_index_start;
630
631         /* Outer loop uses 41 flops */
632     }
633
634     /* Increment number of outer iterations */
635     outeriter        += nri;
636
637     /* Update outer/inner flops */
638
639     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_VF,outeriter*41 + inneriter*316);
640 }
641 /*
642  * Gromacs nonbonded kernel:   nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_F_c
643  * Electrostatics interaction: ReactionField
644  * VdW interaction:            LennardJones
645  * Geometry:                   Water4-Water4
646  * Calculate force/pot:        Force
647  */
648 void
649 nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_F_c
650                     (t_nblist * gmx_restrict                nlist,
651                      rvec * gmx_restrict                    xx,
652                      rvec * gmx_restrict                    ff,
653                      t_forcerec * gmx_restrict              fr,
654                      t_mdatoms * gmx_restrict               mdatoms,
655                      nb_kernel_data_t * gmx_restrict        kernel_data,
656                      t_nrnb * gmx_restrict                  nrnb)
657 {
658     int              i_shift_offset,i_coord_offset,j_coord_offset;
659     int              j_index_start,j_index_end;
660     int              nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
661     real             shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
662     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
663     real             *shiftvec,*fshift,*x,*f;
664     int              vdwioffset0;
665     real             ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
666     int              vdwioffset1;
667     real             ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
668     int              vdwioffset2;
669     real             ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
670     int              vdwioffset3;
671     real             ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
672     int              vdwjidx0;
673     real             jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
674     int              vdwjidx1;
675     real             jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
676     int              vdwjidx2;
677     real             jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
678     int              vdwjidx3;
679     real             jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
680     real             dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
681     real             dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11,cexp1_11,cexp2_11;
682     real             dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12,cexp1_12,cexp2_12;
683     real             dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13,cexp1_13,cexp2_13;
684     real             dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21,cexp1_21,cexp2_21;
685     real             dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22,cexp1_22,cexp2_22;
686     real             dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23,cexp1_23,cexp2_23;
687     real             dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31,cexp1_31,cexp2_31;
688     real             dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32,cexp1_32,cexp2_32;
689     real             dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33,cexp1_33,cexp2_33;
690     real             velec,felec,velecsum,facel,crf,krf,krf2;
691     real             *charge;
692     int              nvdwtype;
693     real             rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
694     int              *vdwtype;
695     real             *vdwparam;
696
697     x                = xx[0];
698     f                = ff[0];
699
700     nri              = nlist->nri;
701     iinr             = nlist->iinr;
702     jindex           = nlist->jindex;
703     jjnr             = nlist->jjnr;
704     shiftidx         = nlist->shift;
705     gid              = nlist->gid;
706     shiftvec         = fr->shift_vec[0];
707     fshift           = fr->fshift[0];
708     facel            = fr->epsfac;
709     charge           = mdatoms->chargeA;
710     krf              = fr->ic->k_rf;
711     krf2             = krf*2.0;
712     crf              = fr->ic->c_rf;
713     nvdwtype         = fr->ntype;
714     vdwparam         = fr->nbfp;
715     vdwtype          = mdatoms->typeA;
716
717     /* Setup water-specific parameters */
718     inr              = nlist->iinr[0];
719     iq1              = facel*charge[inr+1];
720     iq2              = facel*charge[inr+2];
721     iq3              = facel*charge[inr+3];
722     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
723
724     jq1              = charge[inr+1];
725     jq2              = charge[inr+2];
726     jq3              = charge[inr+3];
727     vdwjidx0         = 2*vdwtype[inr+0];
728     c6_00            = vdwparam[vdwioffset0+vdwjidx0];
729     c12_00           = vdwparam[vdwioffset0+vdwjidx0+1];
730     qq11             = iq1*jq1;
731     qq12             = iq1*jq2;
732     qq13             = iq1*jq3;
733     qq21             = iq2*jq1;
734     qq22             = iq2*jq2;
735     qq23             = iq2*jq3;
736     qq31             = iq3*jq1;
737     qq32             = iq3*jq2;
738     qq33             = iq3*jq3;
739
740     /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
741     rcutoff          = fr->rcoulomb;
742     rcutoff2         = rcutoff*rcutoff;
743
744     sh_vdw_invrcut6  = fr->ic->sh_invrc6;
745     rvdw             = fr->rvdw;
746
747     outeriter        = 0;
748     inneriter        = 0;
749
750     /* Start outer loop over neighborlists */
751     for(iidx=0; iidx<nri; iidx++)
752     {
753         /* Load shift vector for this list */
754         i_shift_offset   = DIM*shiftidx[iidx];
755         shX              = shiftvec[i_shift_offset+XX];
756         shY              = shiftvec[i_shift_offset+YY];
757         shZ              = shiftvec[i_shift_offset+ZZ];
758
759         /* Load limits for loop over neighbors */
760         j_index_start    = jindex[iidx];
761         j_index_end      = jindex[iidx+1];
762
763         /* Get outer coordinate index */
764         inr              = iinr[iidx];
765         i_coord_offset   = DIM*inr;
766
767         /* Load i particle coords and add shift vector */
768         ix0              = shX + x[i_coord_offset+DIM*0+XX];
769         iy0              = shY + x[i_coord_offset+DIM*0+YY];
770         iz0              = shZ + x[i_coord_offset+DIM*0+ZZ];
771         ix1              = shX + x[i_coord_offset+DIM*1+XX];
772         iy1              = shY + x[i_coord_offset+DIM*1+YY];
773         iz1              = shZ + x[i_coord_offset+DIM*1+ZZ];
774         ix2              = shX + x[i_coord_offset+DIM*2+XX];
775         iy2              = shY + x[i_coord_offset+DIM*2+YY];
776         iz2              = shZ + x[i_coord_offset+DIM*2+ZZ];
777         ix3              = shX + x[i_coord_offset+DIM*3+XX];
778         iy3              = shY + x[i_coord_offset+DIM*3+YY];
779         iz3              = shZ + x[i_coord_offset+DIM*3+ZZ];
780
781         fix0             = 0.0;
782         fiy0             = 0.0;
783         fiz0             = 0.0;
784         fix1             = 0.0;
785         fiy1             = 0.0;
786         fiz1             = 0.0;
787         fix2             = 0.0;
788         fiy2             = 0.0;
789         fiz2             = 0.0;
790         fix3             = 0.0;
791         fiy3             = 0.0;
792         fiz3             = 0.0;
793
794         /* Start inner kernel loop */
795         for(jidx=j_index_start; jidx<j_index_end; jidx++)
796         {
797             /* Get j neighbor index, and coordinate index */
798             jnr              = jjnr[jidx];
799             j_coord_offset   = DIM*jnr;
800
801             /* load j atom coordinates */
802             jx0              = x[j_coord_offset+DIM*0+XX];
803             jy0              = x[j_coord_offset+DIM*0+YY];
804             jz0              = x[j_coord_offset+DIM*0+ZZ];
805             jx1              = x[j_coord_offset+DIM*1+XX];
806             jy1              = x[j_coord_offset+DIM*1+YY];
807             jz1              = x[j_coord_offset+DIM*1+ZZ];
808             jx2              = x[j_coord_offset+DIM*2+XX];
809             jy2              = x[j_coord_offset+DIM*2+YY];
810             jz2              = x[j_coord_offset+DIM*2+ZZ];
811             jx3              = x[j_coord_offset+DIM*3+XX];
812             jy3              = x[j_coord_offset+DIM*3+YY];
813             jz3              = x[j_coord_offset+DIM*3+ZZ];
814
815             /* Calculate displacement vector */
816             dx00             = ix0 - jx0;
817             dy00             = iy0 - jy0;
818             dz00             = iz0 - jz0;
819             dx11             = ix1 - jx1;
820             dy11             = iy1 - jy1;
821             dz11             = iz1 - jz1;
822             dx12             = ix1 - jx2;
823             dy12             = iy1 - jy2;
824             dz12             = iz1 - jz2;
825             dx13             = ix1 - jx3;
826             dy13             = iy1 - jy3;
827             dz13             = iz1 - jz3;
828             dx21             = ix2 - jx1;
829             dy21             = iy2 - jy1;
830             dz21             = iz2 - jz1;
831             dx22             = ix2 - jx2;
832             dy22             = iy2 - jy2;
833             dz22             = iz2 - jz2;
834             dx23             = ix2 - jx3;
835             dy23             = iy2 - jy3;
836             dz23             = iz2 - jz3;
837             dx31             = ix3 - jx1;
838             dy31             = iy3 - jy1;
839             dz31             = iz3 - jz1;
840             dx32             = ix3 - jx2;
841             dy32             = iy3 - jy2;
842             dz32             = iz3 - jz2;
843             dx33             = ix3 - jx3;
844             dy33             = iy3 - jy3;
845             dz33             = iz3 - jz3;
846
847             /* Calculate squared distance and things based on it */
848             rsq00            = dx00*dx00+dy00*dy00+dz00*dz00;
849             rsq11            = dx11*dx11+dy11*dy11+dz11*dz11;
850             rsq12            = dx12*dx12+dy12*dy12+dz12*dz12;
851             rsq13            = dx13*dx13+dy13*dy13+dz13*dz13;
852             rsq21            = dx21*dx21+dy21*dy21+dz21*dz21;
853             rsq22            = dx22*dx22+dy22*dy22+dz22*dz22;
854             rsq23            = dx23*dx23+dy23*dy23+dz23*dz23;
855             rsq31            = dx31*dx31+dy31*dy31+dz31*dz31;
856             rsq32            = dx32*dx32+dy32*dy32+dz32*dz32;
857             rsq33            = dx33*dx33+dy33*dy33+dz33*dz33;
858
859             rinv11           = gmx_invsqrt(rsq11);
860             rinv12           = gmx_invsqrt(rsq12);
861             rinv13           = gmx_invsqrt(rsq13);
862             rinv21           = gmx_invsqrt(rsq21);
863             rinv22           = gmx_invsqrt(rsq22);
864             rinv23           = gmx_invsqrt(rsq23);
865             rinv31           = gmx_invsqrt(rsq31);
866             rinv32           = gmx_invsqrt(rsq32);
867             rinv33           = gmx_invsqrt(rsq33);
868
869             rinvsq00         = 1.0/rsq00;
870             rinvsq11         = rinv11*rinv11;
871             rinvsq12         = rinv12*rinv12;
872             rinvsq13         = rinv13*rinv13;
873             rinvsq21         = rinv21*rinv21;
874             rinvsq22         = rinv22*rinv22;
875             rinvsq23         = rinv23*rinv23;
876             rinvsq31         = rinv31*rinv31;
877             rinvsq32         = rinv32*rinv32;
878             rinvsq33         = rinv33*rinv33;
879
880             /**************************
881              * CALCULATE INTERACTIONS *
882              **************************/
883
884             if (rsq00<rcutoff2)
885             {
886
887             /* LENNARD-JONES DISPERSION/REPULSION */
888
889             rinvsix          = rinvsq00*rinvsq00*rinvsq00;
890             fvdw             = (c12_00*rinvsix-c6_00)*rinvsix*rinvsq00;
891
892             fscal            = fvdw;
893
894             /* Calculate temporary vectorial force */
895             tx               = fscal*dx00;
896             ty               = fscal*dy00;
897             tz               = fscal*dz00;
898
899             /* Update vectorial force */
900             fix0            += tx;
901             fiy0            += ty;
902             fiz0            += tz;
903             f[j_coord_offset+DIM*0+XX] -= tx;
904             f[j_coord_offset+DIM*0+YY] -= ty;
905             f[j_coord_offset+DIM*0+ZZ] -= tz;
906
907             }
908
909             /**************************
910              * CALCULATE INTERACTIONS *
911              **************************/
912
913             if (rsq11<rcutoff2)
914             {
915
916             /* REACTION-FIELD ELECTROSTATICS */
917             felec            = qq11*(rinv11*rinvsq11-krf2);
918
919             fscal            = felec;
920
921             /* Calculate temporary vectorial force */
922             tx               = fscal*dx11;
923             ty               = fscal*dy11;
924             tz               = fscal*dz11;
925
926             /* Update vectorial force */
927             fix1            += tx;
928             fiy1            += ty;
929             fiz1            += tz;
930             f[j_coord_offset+DIM*1+XX] -= tx;
931             f[j_coord_offset+DIM*1+YY] -= ty;
932             f[j_coord_offset+DIM*1+ZZ] -= tz;
933
934             }
935
936             /**************************
937              * CALCULATE INTERACTIONS *
938              **************************/
939
940             if (rsq12<rcutoff2)
941             {
942
943             /* REACTION-FIELD ELECTROSTATICS */
944             felec            = qq12*(rinv12*rinvsq12-krf2);
945
946             fscal            = felec;
947
948             /* Calculate temporary vectorial force */
949             tx               = fscal*dx12;
950             ty               = fscal*dy12;
951             tz               = fscal*dz12;
952
953             /* Update vectorial force */
954             fix1            += tx;
955             fiy1            += ty;
956             fiz1            += tz;
957             f[j_coord_offset+DIM*2+XX] -= tx;
958             f[j_coord_offset+DIM*2+YY] -= ty;
959             f[j_coord_offset+DIM*2+ZZ] -= tz;
960
961             }
962
963             /**************************
964              * CALCULATE INTERACTIONS *
965              **************************/
966
967             if (rsq13<rcutoff2)
968             {
969
970             /* REACTION-FIELD ELECTROSTATICS */
971             felec            = qq13*(rinv13*rinvsq13-krf2);
972
973             fscal            = felec;
974
975             /* Calculate temporary vectorial force */
976             tx               = fscal*dx13;
977             ty               = fscal*dy13;
978             tz               = fscal*dz13;
979
980             /* Update vectorial force */
981             fix1            += tx;
982             fiy1            += ty;
983             fiz1            += tz;
984             f[j_coord_offset+DIM*3+XX] -= tx;
985             f[j_coord_offset+DIM*3+YY] -= ty;
986             f[j_coord_offset+DIM*3+ZZ] -= tz;
987
988             }
989
990             /**************************
991              * CALCULATE INTERACTIONS *
992              **************************/
993
994             if (rsq21<rcutoff2)
995             {
996
997             /* REACTION-FIELD ELECTROSTATICS */
998             felec            = qq21*(rinv21*rinvsq21-krf2);
999
1000             fscal            = felec;
1001
1002             /* Calculate temporary vectorial force */
1003             tx               = fscal*dx21;
1004             ty               = fscal*dy21;
1005             tz               = fscal*dz21;
1006
1007             /* Update vectorial force */
1008             fix2            += tx;
1009             fiy2            += ty;
1010             fiz2            += tz;
1011             f[j_coord_offset+DIM*1+XX] -= tx;
1012             f[j_coord_offset+DIM*1+YY] -= ty;
1013             f[j_coord_offset+DIM*1+ZZ] -= tz;
1014
1015             }
1016
1017             /**************************
1018              * CALCULATE INTERACTIONS *
1019              **************************/
1020
1021             if (rsq22<rcutoff2)
1022             {
1023
1024             /* REACTION-FIELD ELECTROSTATICS */
1025             felec            = qq22*(rinv22*rinvsq22-krf2);
1026
1027             fscal            = felec;
1028
1029             /* Calculate temporary vectorial force */
1030             tx               = fscal*dx22;
1031             ty               = fscal*dy22;
1032             tz               = fscal*dz22;
1033
1034             /* Update vectorial force */
1035             fix2            += tx;
1036             fiy2            += ty;
1037             fiz2            += tz;
1038             f[j_coord_offset+DIM*2+XX] -= tx;
1039             f[j_coord_offset+DIM*2+YY] -= ty;
1040             f[j_coord_offset+DIM*2+ZZ] -= tz;
1041
1042             }
1043
1044             /**************************
1045              * CALCULATE INTERACTIONS *
1046              **************************/
1047
1048             if (rsq23<rcutoff2)
1049             {
1050
1051             /* REACTION-FIELD ELECTROSTATICS */
1052             felec            = qq23*(rinv23*rinvsq23-krf2);
1053
1054             fscal            = felec;
1055
1056             /* Calculate temporary vectorial force */
1057             tx               = fscal*dx23;
1058             ty               = fscal*dy23;
1059             tz               = fscal*dz23;
1060
1061             /* Update vectorial force */
1062             fix2            += tx;
1063             fiy2            += ty;
1064             fiz2            += tz;
1065             f[j_coord_offset+DIM*3+XX] -= tx;
1066             f[j_coord_offset+DIM*3+YY] -= ty;
1067             f[j_coord_offset+DIM*3+ZZ] -= tz;
1068
1069             }
1070
1071             /**************************
1072              * CALCULATE INTERACTIONS *
1073              **************************/
1074
1075             if (rsq31<rcutoff2)
1076             {
1077
1078             /* REACTION-FIELD ELECTROSTATICS */
1079             felec            = qq31*(rinv31*rinvsq31-krf2);
1080
1081             fscal            = felec;
1082
1083             /* Calculate temporary vectorial force */
1084             tx               = fscal*dx31;
1085             ty               = fscal*dy31;
1086             tz               = fscal*dz31;
1087
1088             /* Update vectorial force */
1089             fix3            += tx;
1090             fiy3            += ty;
1091             fiz3            += tz;
1092             f[j_coord_offset+DIM*1+XX] -= tx;
1093             f[j_coord_offset+DIM*1+YY] -= ty;
1094             f[j_coord_offset+DIM*1+ZZ] -= tz;
1095
1096             }
1097
1098             /**************************
1099              * CALCULATE INTERACTIONS *
1100              **************************/
1101
1102             if (rsq32<rcutoff2)
1103             {
1104
1105             /* REACTION-FIELD ELECTROSTATICS */
1106             felec            = qq32*(rinv32*rinvsq32-krf2);
1107
1108             fscal            = felec;
1109
1110             /* Calculate temporary vectorial force */
1111             tx               = fscal*dx32;
1112             ty               = fscal*dy32;
1113             tz               = fscal*dz32;
1114
1115             /* Update vectorial force */
1116             fix3            += tx;
1117             fiy3            += ty;
1118             fiz3            += tz;
1119             f[j_coord_offset+DIM*2+XX] -= tx;
1120             f[j_coord_offset+DIM*2+YY] -= ty;
1121             f[j_coord_offset+DIM*2+ZZ] -= tz;
1122
1123             }
1124
1125             /**************************
1126              * CALCULATE INTERACTIONS *
1127              **************************/
1128
1129             if (rsq33<rcutoff2)
1130             {
1131
1132             /* REACTION-FIELD ELECTROSTATICS */
1133             felec            = qq33*(rinv33*rinvsq33-krf2);
1134
1135             fscal            = felec;
1136
1137             /* Calculate temporary vectorial force */
1138             tx               = fscal*dx33;
1139             ty               = fscal*dy33;
1140             tz               = fscal*dz33;
1141
1142             /* Update vectorial force */
1143             fix3            += tx;
1144             fiy3            += ty;
1145             fiz3            += tz;
1146             f[j_coord_offset+DIM*3+XX] -= tx;
1147             f[j_coord_offset+DIM*3+YY] -= ty;
1148             f[j_coord_offset+DIM*3+ZZ] -= tz;
1149
1150             }
1151
1152             /* Inner loop uses 261 flops */
1153         }
1154         /* End of innermost loop */
1155
1156         tx = ty = tz = 0;
1157         f[i_coord_offset+DIM*0+XX] += fix0;
1158         f[i_coord_offset+DIM*0+YY] += fiy0;
1159         f[i_coord_offset+DIM*0+ZZ] += fiz0;
1160         tx                         += fix0;
1161         ty                         += fiy0;
1162         tz                         += fiz0;
1163         f[i_coord_offset+DIM*1+XX] += fix1;
1164         f[i_coord_offset+DIM*1+YY] += fiy1;
1165         f[i_coord_offset+DIM*1+ZZ] += fiz1;
1166         tx                         += fix1;
1167         ty                         += fiy1;
1168         tz                         += fiz1;
1169         f[i_coord_offset+DIM*2+XX] += fix2;
1170         f[i_coord_offset+DIM*2+YY] += fiy2;
1171         f[i_coord_offset+DIM*2+ZZ] += fiz2;
1172         tx                         += fix2;
1173         ty                         += fiy2;
1174         tz                         += fiz2;
1175         f[i_coord_offset+DIM*3+XX] += fix3;
1176         f[i_coord_offset+DIM*3+YY] += fiy3;
1177         f[i_coord_offset+DIM*3+ZZ] += fiz3;
1178         tx                         += fix3;
1179         ty                         += fiy3;
1180         tz                         += fiz3;
1181         fshift[i_shift_offset+XX]  += tx;
1182         fshift[i_shift_offset+YY]  += ty;
1183         fshift[i_shift_offset+ZZ]  += tz;
1184
1185         /* Increment number of inner iterations */
1186         inneriter                  += j_index_end - j_index_start;
1187
1188         /* Outer loop uses 39 flops */
1189     }
1190
1191     /* Increment number of outer iterations */
1192     outeriter        += nri;
1193
1194     /* Update outer/inner flops */
1195
1196     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_F,outeriter*39 + inneriter*261);
1197 }