524d12845a016d2b2926c51aa7776a7972ab564f
[alexxy/gromacs.git] / src / gmxlib / nonbonded / nb_kernel_avx_128_fma_single / nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_single.c
1 /*
2  * Note: this file was generated by the Gromacs avx_128_fma_single kernel generator.
3  *
4  *                This source code is part of
5  *
6  *                 G   R   O   M   A   C   S
7  *
8  * Copyright (c) 2001-2012, The GROMACS Development Team
9  *
10  * Gromacs is a library for molecular simulation and trajectory analysis,
11  * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12  * a full list of developers and information, check out http://www.gromacs.org
13  *
14  * This program is free software; you can redistribute it and/or modify it under
15  * the terms of the GNU Lesser General Public License as published by the Free
16  * Software Foundation; either version 2 of the License, or (at your option) any
17  * later version.
18  *
19  * To help fund GROMACS development, we humbly ask that you cite
20  * the papers people have written on it - you can find them on the website.
21  */
22 #ifdef HAVE_CONFIG_H
23 #include <config.h>
24 #endif
25
26 #include <math.h>
27
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
30 #include "vec.h"
31 #include "nrnb.h"
32
33 #include "gmx_math_x86_avx_128_fma_single.h"
34 #include "kernelutil_x86_avx_128_fma_single.h"
35
36 /*
37  * Gromacs nonbonded kernel:   nb_kernel_ElecRF_VdwLJ_GeomW3P1_VF_avx_128_fma_single
38  * Electrostatics interaction: ReactionField
39  * VdW interaction:            LennardJones
40  * Geometry:                   Water3-Particle
41  * Calculate force/pot:        PotentialAndForce
42  */
43 void
44 nb_kernel_ElecRF_VdwLJ_GeomW3P1_VF_avx_128_fma_single
45                     (t_nblist * gmx_restrict                nlist,
46                      rvec * gmx_restrict                    xx,
47                      rvec * gmx_restrict                    ff,
48                      t_forcerec * gmx_restrict              fr,
49                      t_mdatoms * gmx_restrict               mdatoms,
50                      nb_kernel_data_t * gmx_restrict        kernel_data,
51                      t_nrnb * gmx_restrict                  nrnb)
52 {
53     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54      * just 0 for non-waters.
55      * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
56      * jnr indices corresponding to data put in the four positions in the SIMD register.
57      */
58     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
59     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60     int              jnrA,jnrB,jnrC,jnrD;
61     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
64     real             rcutoff_scalar;
65     real             *shiftvec,*fshift,*x,*f;
66     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD;
67     real             scratch[4*DIM];
68     __m128           fscal,rcutoff,rcutoff2,jidxall;
69     int              vdwioffset0;
70     __m128           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
71     int              vdwioffset1;
72     __m128           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
73     int              vdwioffset2;
74     __m128           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
75     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
76     __m128           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
77     __m128           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
78     __m128           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
79     __m128           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
80     __m128           velec,felec,velecsum,facel,crf,krf,krf2;
81     real             *charge;
82     int              nvdwtype;
83     __m128           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
84     int              *vdwtype;
85     real             *vdwparam;
86     __m128           one_sixth   = _mm_set1_ps(1.0/6.0);
87     __m128           one_twelfth = _mm_set1_ps(1.0/12.0);
88     __m128           dummy_mask,cutoff_mask;
89     __m128           signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
90     __m128           one     = _mm_set1_ps(1.0);
91     __m128           two     = _mm_set1_ps(2.0);
92     x                = xx[0];
93     f                = ff[0];
94
95     nri              = nlist->nri;
96     iinr             = nlist->iinr;
97     jindex           = nlist->jindex;
98     jjnr             = nlist->jjnr;
99     shiftidx         = nlist->shift;
100     gid              = nlist->gid;
101     shiftvec         = fr->shift_vec[0];
102     fshift           = fr->fshift[0];
103     facel            = _mm_set1_ps(fr->epsfac);
104     charge           = mdatoms->chargeA;
105     krf              = _mm_set1_ps(fr->ic->k_rf);
106     krf2             = _mm_set1_ps(fr->ic->k_rf*2.0);
107     crf              = _mm_set1_ps(fr->ic->c_rf);
108     nvdwtype         = fr->ntype;
109     vdwparam         = fr->nbfp;
110     vdwtype          = mdatoms->typeA;
111
112     /* Setup water-specific parameters */
113     inr              = nlist->iinr[0];
114     iq0              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
115     iq1              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
116     iq2              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
117     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
118
119     /* Avoid stupid compiler warnings */
120     jnrA = jnrB = jnrC = jnrD = 0;
121     j_coord_offsetA = 0;
122     j_coord_offsetB = 0;
123     j_coord_offsetC = 0;
124     j_coord_offsetD = 0;
125
126     outeriter        = 0;
127     inneriter        = 0;
128
129     for(iidx=0;iidx<4*DIM;iidx++)
130     {
131         scratch[iidx] = 0.0;
132     }
133
134     /* Start outer loop over neighborlists */
135     for(iidx=0; iidx<nri; iidx++)
136     {
137         /* Load shift vector for this list */
138         i_shift_offset   = DIM*shiftidx[iidx];
139
140         /* Load limits for loop over neighbors */
141         j_index_start    = jindex[iidx];
142         j_index_end      = jindex[iidx+1];
143
144         /* Get outer coordinate index */
145         inr              = iinr[iidx];
146         i_coord_offset   = DIM*inr;
147
148         /* Load i particle coords and add shift vector */
149         gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
150                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
151
152         fix0             = _mm_setzero_ps();
153         fiy0             = _mm_setzero_ps();
154         fiz0             = _mm_setzero_ps();
155         fix1             = _mm_setzero_ps();
156         fiy1             = _mm_setzero_ps();
157         fiz1             = _mm_setzero_ps();
158         fix2             = _mm_setzero_ps();
159         fiy2             = _mm_setzero_ps();
160         fiz2             = _mm_setzero_ps();
161
162         /* Reset potential sums */
163         velecsum         = _mm_setzero_ps();
164         vvdwsum          = _mm_setzero_ps();
165
166         /* Start inner kernel loop */
167         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
168         {
169
170             /* Get j neighbor index, and coordinate index */
171             jnrA             = jjnr[jidx];
172             jnrB             = jjnr[jidx+1];
173             jnrC             = jjnr[jidx+2];
174             jnrD             = jjnr[jidx+3];
175             j_coord_offsetA  = DIM*jnrA;
176             j_coord_offsetB  = DIM*jnrB;
177             j_coord_offsetC  = DIM*jnrC;
178             j_coord_offsetD  = DIM*jnrD;
179
180             /* load j atom coordinates */
181             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
182                                               x+j_coord_offsetC,x+j_coord_offsetD,
183                                               &jx0,&jy0,&jz0);
184
185             /* Calculate displacement vector */
186             dx00             = _mm_sub_ps(ix0,jx0);
187             dy00             = _mm_sub_ps(iy0,jy0);
188             dz00             = _mm_sub_ps(iz0,jz0);
189             dx10             = _mm_sub_ps(ix1,jx0);
190             dy10             = _mm_sub_ps(iy1,jy0);
191             dz10             = _mm_sub_ps(iz1,jz0);
192             dx20             = _mm_sub_ps(ix2,jx0);
193             dy20             = _mm_sub_ps(iy2,jy0);
194             dz20             = _mm_sub_ps(iz2,jz0);
195
196             /* Calculate squared distance and things based on it */
197             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
198             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
199             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
200
201             rinv00           = gmx_mm_invsqrt_ps(rsq00);
202             rinv10           = gmx_mm_invsqrt_ps(rsq10);
203             rinv20           = gmx_mm_invsqrt_ps(rsq20);
204
205             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
206             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
207             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
208
209             /* Load parameters for j particles */
210             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
211                                                               charge+jnrC+0,charge+jnrD+0);
212             vdwjidx0A        = 2*vdwtype[jnrA+0];
213             vdwjidx0B        = 2*vdwtype[jnrB+0];
214             vdwjidx0C        = 2*vdwtype[jnrC+0];
215             vdwjidx0D        = 2*vdwtype[jnrD+0];
216
217             fjx0             = _mm_setzero_ps();
218             fjy0             = _mm_setzero_ps();
219             fjz0             = _mm_setzero_ps();
220
221             /**************************
222              * CALCULATE INTERACTIONS *
223              **************************/
224
225             /* Compute parameters for interactions between i and j atoms */
226             qq00             = _mm_mul_ps(iq0,jq0);
227             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
228                                          vdwparam+vdwioffset0+vdwjidx0B,
229                                          vdwparam+vdwioffset0+vdwjidx0C,
230                                          vdwparam+vdwioffset0+vdwjidx0D,
231                                          &c6_00,&c12_00);
232
233             /* REACTION-FIELD ELECTROSTATICS */
234             velec            = _mm_mul_ps(qq00,_mm_sub_ps(_mm_macc_ps(krf,rsq00,rinv00),crf));
235             felec            = _mm_mul_ps(qq00,_mm_msub_ps(rinv00,rinvsq00,krf2));
236
237             /* LENNARD-JONES DISPERSION/REPULSION */
238
239             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
240             vvdw6            = _mm_mul_ps(c6_00,rinvsix);
241             vvdw12           = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
242             vvdw             = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
243             fvdw             = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
244
245             /* Update potential sum for this i atom from the interaction with this j atom. */
246             velecsum         = _mm_add_ps(velecsum,velec);
247             vvdwsum          = _mm_add_ps(vvdwsum,vvdw);
248
249             fscal            = _mm_add_ps(felec,fvdw);
250
251              /* Update vectorial force */
252             fix0             = _mm_macc_ps(dx00,fscal,fix0);
253             fiy0             = _mm_macc_ps(dy00,fscal,fiy0);
254             fiz0             = _mm_macc_ps(dz00,fscal,fiz0);
255
256             fjx0             = _mm_macc_ps(dx00,fscal,fjx0);
257             fjy0             = _mm_macc_ps(dy00,fscal,fjy0);
258             fjz0             = _mm_macc_ps(dz00,fscal,fjz0);
259
260             /**************************
261              * CALCULATE INTERACTIONS *
262              **************************/
263
264             /* Compute parameters for interactions between i and j atoms */
265             qq10             = _mm_mul_ps(iq1,jq0);
266
267             /* REACTION-FIELD ELECTROSTATICS */
268             velec            = _mm_mul_ps(qq10,_mm_sub_ps(_mm_macc_ps(krf,rsq10,rinv10),crf));
269             felec            = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
270
271             /* Update potential sum for this i atom from the interaction with this j atom. */
272             velecsum         = _mm_add_ps(velecsum,velec);
273
274             fscal            = felec;
275
276              /* Update vectorial force */
277             fix1             = _mm_macc_ps(dx10,fscal,fix1);
278             fiy1             = _mm_macc_ps(dy10,fscal,fiy1);
279             fiz1             = _mm_macc_ps(dz10,fscal,fiz1);
280
281             fjx0             = _mm_macc_ps(dx10,fscal,fjx0);
282             fjy0             = _mm_macc_ps(dy10,fscal,fjy0);
283             fjz0             = _mm_macc_ps(dz10,fscal,fjz0);
284
285             /**************************
286              * CALCULATE INTERACTIONS *
287              **************************/
288
289             /* Compute parameters for interactions between i and j atoms */
290             qq20             = _mm_mul_ps(iq2,jq0);
291
292             /* REACTION-FIELD ELECTROSTATICS */
293             velec            = _mm_mul_ps(qq20,_mm_sub_ps(_mm_macc_ps(krf,rsq20,rinv20),crf));
294             felec            = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
295
296             /* Update potential sum for this i atom from the interaction with this j atom. */
297             velecsum         = _mm_add_ps(velecsum,velec);
298
299             fscal            = felec;
300
301              /* Update vectorial force */
302             fix2             = _mm_macc_ps(dx20,fscal,fix2);
303             fiy2             = _mm_macc_ps(dy20,fscal,fiy2);
304             fiz2             = _mm_macc_ps(dz20,fscal,fiz2);
305
306             fjx0             = _mm_macc_ps(dx20,fscal,fjx0);
307             fjy0             = _mm_macc_ps(dy20,fscal,fjy0);
308             fjz0             = _mm_macc_ps(dz20,fscal,fjz0);
309
310             fjptrA             = f+j_coord_offsetA;
311             fjptrB             = f+j_coord_offsetB;
312             fjptrC             = f+j_coord_offsetC;
313             fjptrD             = f+j_coord_offsetD;
314
315             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
316
317             /* Inner loop uses 117 flops */
318         }
319
320         if(jidx<j_index_end)
321         {
322
323             /* Get j neighbor index, and coordinate index */
324             jnrlistA         = jjnr[jidx];
325             jnrlistB         = jjnr[jidx+1];
326             jnrlistC         = jjnr[jidx+2];
327             jnrlistD         = jjnr[jidx+3];
328             /* Sign of each element will be negative for non-real atoms.
329              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
330              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
331              */
332             dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
333             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
334             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
335             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
336             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
337             j_coord_offsetA  = DIM*jnrA;
338             j_coord_offsetB  = DIM*jnrB;
339             j_coord_offsetC  = DIM*jnrC;
340             j_coord_offsetD  = DIM*jnrD;
341
342             /* load j atom coordinates */
343             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
344                                               x+j_coord_offsetC,x+j_coord_offsetD,
345                                               &jx0,&jy0,&jz0);
346
347             /* Calculate displacement vector */
348             dx00             = _mm_sub_ps(ix0,jx0);
349             dy00             = _mm_sub_ps(iy0,jy0);
350             dz00             = _mm_sub_ps(iz0,jz0);
351             dx10             = _mm_sub_ps(ix1,jx0);
352             dy10             = _mm_sub_ps(iy1,jy0);
353             dz10             = _mm_sub_ps(iz1,jz0);
354             dx20             = _mm_sub_ps(ix2,jx0);
355             dy20             = _mm_sub_ps(iy2,jy0);
356             dz20             = _mm_sub_ps(iz2,jz0);
357
358             /* Calculate squared distance and things based on it */
359             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
360             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
361             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
362
363             rinv00           = gmx_mm_invsqrt_ps(rsq00);
364             rinv10           = gmx_mm_invsqrt_ps(rsq10);
365             rinv20           = gmx_mm_invsqrt_ps(rsq20);
366
367             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
368             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
369             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
370
371             /* Load parameters for j particles */
372             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
373                                                               charge+jnrC+0,charge+jnrD+0);
374             vdwjidx0A        = 2*vdwtype[jnrA+0];
375             vdwjidx0B        = 2*vdwtype[jnrB+0];
376             vdwjidx0C        = 2*vdwtype[jnrC+0];
377             vdwjidx0D        = 2*vdwtype[jnrD+0];
378
379             fjx0             = _mm_setzero_ps();
380             fjy0             = _mm_setzero_ps();
381             fjz0             = _mm_setzero_ps();
382
383             /**************************
384              * CALCULATE INTERACTIONS *
385              **************************/
386
387             /* Compute parameters for interactions between i and j atoms */
388             qq00             = _mm_mul_ps(iq0,jq0);
389             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
390                                          vdwparam+vdwioffset0+vdwjidx0B,
391                                          vdwparam+vdwioffset0+vdwjidx0C,
392                                          vdwparam+vdwioffset0+vdwjidx0D,
393                                          &c6_00,&c12_00);
394
395             /* REACTION-FIELD ELECTROSTATICS */
396             velec            = _mm_mul_ps(qq00,_mm_sub_ps(_mm_macc_ps(krf,rsq00,rinv00),crf));
397             felec            = _mm_mul_ps(qq00,_mm_msub_ps(rinv00,rinvsq00,krf2));
398
399             /* LENNARD-JONES DISPERSION/REPULSION */
400
401             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
402             vvdw6            = _mm_mul_ps(c6_00,rinvsix);
403             vvdw12           = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
404             vvdw             = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
405             fvdw             = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
406
407             /* Update potential sum for this i atom from the interaction with this j atom. */
408             velec            = _mm_andnot_ps(dummy_mask,velec);
409             velecsum         = _mm_add_ps(velecsum,velec);
410             vvdw             = _mm_andnot_ps(dummy_mask,vvdw);
411             vvdwsum          = _mm_add_ps(vvdwsum,vvdw);
412
413             fscal            = _mm_add_ps(felec,fvdw);
414
415             fscal            = _mm_andnot_ps(dummy_mask,fscal);
416
417              /* Update vectorial force */
418             fix0             = _mm_macc_ps(dx00,fscal,fix0);
419             fiy0             = _mm_macc_ps(dy00,fscal,fiy0);
420             fiz0             = _mm_macc_ps(dz00,fscal,fiz0);
421
422             fjx0             = _mm_macc_ps(dx00,fscal,fjx0);
423             fjy0             = _mm_macc_ps(dy00,fscal,fjy0);
424             fjz0             = _mm_macc_ps(dz00,fscal,fjz0);
425
426             /**************************
427              * CALCULATE INTERACTIONS *
428              **************************/
429
430             /* Compute parameters for interactions between i and j atoms */
431             qq10             = _mm_mul_ps(iq1,jq0);
432
433             /* REACTION-FIELD ELECTROSTATICS */
434             velec            = _mm_mul_ps(qq10,_mm_sub_ps(_mm_macc_ps(krf,rsq10,rinv10),crf));
435             felec            = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
436
437             /* Update potential sum for this i atom from the interaction with this j atom. */
438             velec            = _mm_andnot_ps(dummy_mask,velec);
439             velecsum         = _mm_add_ps(velecsum,velec);
440
441             fscal            = felec;
442
443             fscal            = _mm_andnot_ps(dummy_mask,fscal);
444
445              /* Update vectorial force */
446             fix1             = _mm_macc_ps(dx10,fscal,fix1);
447             fiy1             = _mm_macc_ps(dy10,fscal,fiy1);
448             fiz1             = _mm_macc_ps(dz10,fscal,fiz1);
449
450             fjx0             = _mm_macc_ps(dx10,fscal,fjx0);
451             fjy0             = _mm_macc_ps(dy10,fscal,fjy0);
452             fjz0             = _mm_macc_ps(dz10,fscal,fjz0);
453
454             /**************************
455              * CALCULATE INTERACTIONS *
456              **************************/
457
458             /* Compute parameters for interactions between i and j atoms */
459             qq20             = _mm_mul_ps(iq2,jq0);
460
461             /* REACTION-FIELD ELECTROSTATICS */
462             velec            = _mm_mul_ps(qq20,_mm_sub_ps(_mm_macc_ps(krf,rsq20,rinv20),crf));
463             felec            = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
464
465             /* Update potential sum for this i atom from the interaction with this j atom. */
466             velec            = _mm_andnot_ps(dummy_mask,velec);
467             velecsum         = _mm_add_ps(velecsum,velec);
468
469             fscal            = felec;
470
471             fscal            = _mm_andnot_ps(dummy_mask,fscal);
472
473              /* Update vectorial force */
474             fix2             = _mm_macc_ps(dx20,fscal,fix2);
475             fiy2             = _mm_macc_ps(dy20,fscal,fiy2);
476             fiz2             = _mm_macc_ps(dz20,fscal,fiz2);
477
478             fjx0             = _mm_macc_ps(dx20,fscal,fjx0);
479             fjy0             = _mm_macc_ps(dy20,fscal,fjy0);
480             fjz0             = _mm_macc_ps(dz20,fscal,fjz0);
481
482             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
483             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
484             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
485             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
486
487             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
488
489             /* Inner loop uses 117 flops */
490         }
491
492         /* End of innermost loop */
493
494         gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
495                                               f+i_coord_offset,fshift+i_shift_offset);
496
497         ggid                        = gid[iidx];
498         /* Update potential energies */
499         gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
500         gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
501
502         /* Increment number of inner iterations */
503         inneriter                  += j_index_end - j_index_start;
504
505         /* Outer loop uses 20 flops */
506     }
507
508     /* Increment number of outer iterations */
509     outeriter        += nri;
510
511     /* Update outer/inner flops */
512
513     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*117);
514 }
515 /*
516  * Gromacs nonbonded kernel:   nb_kernel_ElecRF_VdwLJ_GeomW3P1_F_avx_128_fma_single
517  * Electrostatics interaction: ReactionField
518  * VdW interaction:            LennardJones
519  * Geometry:                   Water3-Particle
520  * Calculate force/pot:        Force
521  */
522 void
523 nb_kernel_ElecRF_VdwLJ_GeomW3P1_F_avx_128_fma_single
524                     (t_nblist * gmx_restrict                nlist,
525                      rvec * gmx_restrict                    xx,
526                      rvec * gmx_restrict                    ff,
527                      t_forcerec * gmx_restrict              fr,
528                      t_mdatoms * gmx_restrict               mdatoms,
529                      nb_kernel_data_t * gmx_restrict        kernel_data,
530                      t_nrnb * gmx_restrict                  nrnb)
531 {
532     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
533      * just 0 for non-waters.
534      * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
535      * jnr indices corresponding to data put in the four positions in the SIMD register.
536      */
537     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
538     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
539     int              jnrA,jnrB,jnrC,jnrD;
540     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
541     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
542     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
543     real             rcutoff_scalar;
544     real             *shiftvec,*fshift,*x,*f;
545     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD;
546     real             scratch[4*DIM];
547     __m128           fscal,rcutoff,rcutoff2,jidxall;
548     int              vdwioffset0;
549     __m128           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
550     int              vdwioffset1;
551     __m128           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
552     int              vdwioffset2;
553     __m128           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
554     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
555     __m128           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
556     __m128           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
557     __m128           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
558     __m128           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
559     __m128           velec,felec,velecsum,facel,crf,krf,krf2;
560     real             *charge;
561     int              nvdwtype;
562     __m128           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
563     int              *vdwtype;
564     real             *vdwparam;
565     __m128           one_sixth   = _mm_set1_ps(1.0/6.0);
566     __m128           one_twelfth = _mm_set1_ps(1.0/12.0);
567     __m128           dummy_mask,cutoff_mask;
568     __m128           signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
569     __m128           one     = _mm_set1_ps(1.0);
570     __m128           two     = _mm_set1_ps(2.0);
571     x                = xx[0];
572     f                = ff[0];
573
574     nri              = nlist->nri;
575     iinr             = nlist->iinr;
576     jindex           = nlist->jindex;
577     jjnr             = nlist->jjnr;
578     shiftidx         = nlist->shift;
579     gid              = nlist->gid;
580     shiftvec         = fr->shift_vec[0];
581     fshift           = fr->fshift[0];
582     facel            = _mm_set1_ps(fr->epsfac);
583     charge           = mdatoms->chargeA;
584     krf              = _mm_set1_ps(fr->ic->k_rf);
585     krf2             = _mm_set1_ps(fr->ic->k_rf*2.0);
586     crf              = _mm_set1_ps(fr->ic->c_rf);
587     nvdwtype         = fr->ntype;
588     vdwparam         = fr->nbfp;
589     vdwtype          = mdatoms->typeA;
590
591     /* Setup water-specific parameters */
592     inr              = nlist->iinr[0];
593     iq0              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
594     iq1              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
595     iq2              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
596     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
597
598     /* Avoid stupid compiler warnings */
599     jnrA = jnrB = jnrC = jnrD = 0;
600     j_coord_offsetA = 0;
601     j_coord_offsetB = 0;
602     j_coord_offsetC = 0;
603     j_coord_offsetD = 0;
604
605     outeriter        = 0;
606     inneriter        = 0;
607
608     for(iidx=0;iidx<4*DIM;iidx++)
609     {
610         scratch[iidx] = 0.0;
611     }
612
613     /* Start outer loop over neighborlists */
614     for(iidx=0; iidx<nri; iidx++)
615     {
616         /* Load shift vector for this list */
617         i_shift_offset   = DIM*shiftidx[iidx];
618
619         /* Load limits for loop over neighbors */
620         j_index_start    = jindex[iidx];
621         j_index_end      = jindex[iidx+1];
622
623         /* Get outer coordinate index */
624         inr              = iinr[iidx];
625         i_coord_offset   = DIM*inr;
626
627         /* Load i particle coords and add shift vector */
628         gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
629                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
630
631         fix0             = _mm_setzero_ps();
632         fiy0             = _mm_setzero_ps();
633         fiz0             = _mm_setzero_ps();
634         fix1             = _mm_setzero_ps();
635         fiy1             = _mm_setzero_ps();
636         fiz1             = _mm_setzero_ps();
637         fix2             = _mm_setzero_ps();
638         fiy2             = _mm_setzero_ps();
639         fiz2             = _mm_setzero_ps();
640
641         /* Start inner kernel loop */
642         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
643         {
644
645             /* Get j neighbor index, and coordinate index */
646             jnrA             = jjnr[jidx];
647             jnrB             = jjnr[jidx+1];
648             jnrC             = jjnr[jidx+2];
649             jnrD             = jjnr[jidx+3];
650             j_coord_offsetA  = DIM*jnrA;
651             j_coord_offsetB  = DIM*jnrB;
652             j_coord_offsetC  = DIM*jnrC;
653             j_coord_offsetD  = DIM*jnrD;
654
655             /* load j atom coordinates */
656             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
657                                               x+j_coord_offsetC,x+j_coord_offsetD,
658                                               &jx0,&jy0,&jz0);
659
660             /* Calculate displacement vector */
661             dx00             = _mm_sub_ps(ix0,jx0);
662             dy00             = _mm_sub_ps(iy0,jy0);
663             dz00             = _mm_sub_ps(iz0,jz0);
664             dx10             = _mm_sub_ps(ix1,jx0);
665             dy10             = _mm_sub_ps(iy1,jy0);
666             dz10             = _mm_sub_ps(iz1,jz0);
667             dx20             = _mm_sub_ps(ix2,jx0);
668             dy20             = _mm_sub_ps(iy2,jy0);
669             dz20             = _mm_sub_ps(iz2,jz0);
670
671             /* Calculate squared distance and things based on it */
672             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
673             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
674             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
675
676             rinv00           = gmx_mm_invsqrt_ps(rsq00);
677             rinv10           = gmx_mm_invsqrt_ps(rsq10);
678             rinv20           = gmx_mm_invsqrt_ps(rsq20);
679
680             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
681             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
682             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
683
684             /* Load parameters for j particles */
685             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
686                                                               charge+jnrC+0,charge+jnrD+0);
687             vdwjidx0A        = 2*vdwtype[jnrA+0];
688             vdwjidx0B        = 2*vdwtype[jnrB+0];
689             vdwjidx0C        = 2*vdwtype[jnrC+0];
690             vdwjidx0D        = 2*vdwtype[jnrD+0];
691
692             fjx0             = _mm_setzero_ps();
693             fjy0             = _mm_setzero_ps();
694             fjz0             = _mm_setzero_ps();
695
696             /**************************
697              * CALCULATE INTERACTIONS *
698              **************************/
699
700             /* Compute parameters for interactions between i and j atoms */
701             qq00             = _mm_mul_ps(iq0,jq0);
702             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
703                                          vdwparam+vdwioffset0+vdwjidx0B,
704                                          vdwparam+vdwioffset0+vdwjidx0C,
705                                          vdwparam+vdwioffset0+vdwjidx0D,
706                                          &c6_00,&c12_00);
707
708             /* REACTION-FIELD ELECTROSTATICS */
709             felec            = _mm_mul_ps(qq00,_mm_msub_ps(rinv00,rinvsq00,krf2));
710
711             /* LENNARD-JONES DISPERSION/REPULSION */
712
713             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
714             fvdw             = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
715
716             fscal            = _mm_add_ps(felec,fvdw);
717
718              /* Update vectorial force */
719             fix0             = _mm_macc_ps(dx00,fscal,fix0);
720             fiy0             = _mm_macc_ps(dy00,fscal,fiy0);
721             fiz0             = _mm_macc_ps(dz00,fscal,fiz0);
722
723             fjx0             = _mm_macc_ps(dx00,fscal,fjx0);
724             fjy0             = _mm_macc_ps(dy00,fscal,fjy0);
725             fjz0             = _mm_macc_ps(dz00,fscal,fjz0);
726
727             /**************************
728              * CALCULATE INTERACTIONS *
729              **************************/
730
731             /* Compute parameters for interactions between i and j atoms */
732             qq10             = _mm_mul_ps(iq1,jq0);
733
734             /* REACTION-FIELD ELECTROSTATICS */
735             felec            = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
736
737             fscal            = felec;
738
739              /* Update vectorial force */
740             fix1             = _mm_macc_ps(dx10,fscal,fix1);
741             fiy1             = _mm_macc_ps(dy10,fscal,fiy1);
742             fiz1             = _mm_macc_ps(dz10,fscal,fiz1);
743
744             fjx0             = _mm_macc_ps(dx10,fscal,fjx0);
745             fjy0             = _mm_macc_ps(dy10,fscal,fjy0);
746             fjz0             = _mm_macc_ps(dz10,fscal,fjz0);
747
748             /**************************
749              * CALCULATE INTERACTIONS *
750              **************************/
751
752             /* Compute parameters for interactions between i and j atoms */
753             qq20             = _mm_mul_ps(iq2,jq0);
754
755             /* REACTION-FIELD ELECTROSTATICS */
756             felec            = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
757
758             fscal            = felec;
759
760              /* Update vectorial force */
761             fix2             = _mm_macc_ps(dx20,fscal,fix2);
762             fiy2             = _mm_macc_ps(dy20,fscal,fiy2);
763             fiz2             = _mm_macc_ps(dz20,fscal,fiz2);
764
765             fjx0             = _mm_macc_ps(dx20,fscal,fjx0);
766             fjy0             = _mm_macc_ps(dy20,fscal,fjy0);
767             fjz0             = _mm_macc_ps(dz20,fscal,fjz0);
768
769             fjptrA             = f+j_coord_offsetA;
770             fjptrB             = f+j_coord_offsetB;
771             fjptrC             = f+j_coord_offsetC;
772             fjptrD             = f+j_coord_offsetD;
773
774             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
775
776             /* Inner loop uses 97 flops */
777         }
778
779         if(jidx<j_index_end)
780         {
781
782             /* Get j neighbor index, and coordinate index */
783             jnrlistA         = jjnr[jidx];
784             jnrlistB         = jjnr[jidx+1];
785             jnrlistC         = jjnr[jidx+2];
786             jnrlistD         = jjnr[jidx+3];
787             /* Sign of each element will be negative for non-real atoms.
788              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
789              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
790              */
791             dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
792             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
793             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
794             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
795             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
796             j_coord_offsetA  = DIM*jnrA;
797             j_coord_offsetB  = DIM*jnrB;
798             j_coord_offsetC  = DIM*jnrC;
799             j_coord_offsetD  = DIM*jnrD;
800
801             /* load j atom coordinates */
802             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
803                                               x+j_coord_offsetC,x+j_coord_offsetD,
804                                               &jx0,&jy0,&jz0);
805
806             /* Calculate displacement vector */
807             dx00             = _mm_sub_ps(ix0,jx0);
808             dy00             = _mm_sub_ps(iy0,jy0);
809             dz00             = _mm_sub_ps(iz0,jz0);
810             dx10             = _mm_sub_ps(ix1,jx0);
811             dy10             = _mm_sub_ps(iy1,jy0);
812             dz10             = _mm_sub_ps(iz1,jz0);
813             dx20             = _mm_sub_ps(ix2,jx0);
814             dy20             = _mm_sub_ps(iy2,jy0);
815             dz20             = _mm_sub_ps(iz2,jz0);
816
817             /* Calculate squared distance and things based on it */
818             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
819             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
820             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
821
822             rinv00           = gmx_mm_invsqrt_ps(rsq00);
823             rinv10           = gmx_mm_invsqrt_ps(rsq10);
824             rinv20           = gmx_mm_invsqrt_ps(rsq20);
825
826             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
827             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
828             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
829
830             /* Load parameters for j particles */
831             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
832                                                               charge+jnrC+0,charge+jnrD+0);
833             vdwjidx0A        = 2*vdwtype[jnrA+0];
834             vdwjidx0B        = 2*vdwtype[jnrB+0];
835             vdwjidx0C        = 2*vdwtype[jnrC+0];
836             vdwjidx0D        = 2*vdwtype[jnrD+0];
837
838             fjx0             = _mm_setzero_ps();
839             fjy0             = _mm_setzero_ps();
840             fjz0             = _mm_setzero_ps();
841
842             /**************************
843              * CALCULATE INTERACTIONS *
844              **************************/
845
846             /* Compute parameters for interactions between i and j atoms */
847             qq00             = _mm_mul_ps(iq0,jq0);
848             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
849                                          vdwparam+vdwioffset0+vdwjidx0B,
850                                          vdwparam+vdwioffset0+vdwjidx0C,
851                                          vdwparam+vdwioffset0+vdwjidx0D,
852                                          &c6_00,&c12_00);
853
854             /* REACTION-FIELD ELECTROSTATICS */
855             felec            = _mm_mul_ps(qq00,_mm_msub_ps(rinv00,rinvsq00,krf2));
856
857             /* LENNARD-JONES DISPERSION/REPULSION */
858
859             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
860             fvdw             = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
861
862             fscal            = _mm_add_ps(felec,fvdw);
863
864             fscal            = _mm_andnot_ps(dummy_mask,fscal);
865
866              /* Update vectorial force */
867             fix0             = _mm_macc_ps(dx00,fscal,fix0);
868             fiy0             = _mm_macc_ps(dy00,fscal,fiy0);
869             fiz0             = _mm_macc_ps(dz00,fscal,fiz0);
870
871             fjx0             = _mm_macc_ps(dx00,fscal,fjx0);
872             fjy0             = _mm_macc_ps(dy00,fscal,fjy0);
873             fjz0             = _mm_macc_ps(dz00,fscal,fjz0);
874
875             /**************************
876              * CALCULATE INTERACTIONS *
877              **************************/
878
879             /* Compute parameters for interactions between i and j atoms */
880             qq10             = _mm_mul_ps(iq1,jq0);
881
882             /* REACTION-FIELD ELECTROSTATICS */
883             felec            = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
884
885             fscal            = felec;
886
887             fscal            = _mm_andnot_ps(dummy_mask,fscal);
888
889              /* Update vectorial force */
890             fix1             = _mm_macc_ps(dx10,fscal,fix1);
891             fiy1             = _mm_macc_ps(dy10,fscal,fiy1);
892             fiz1             = _mm_macc_ps(dz10,fscal,fiz1);
893
894             fjx0             = _mm_macc_ps(dx10,fscal,fjx0);
895             fjy0             = _mm_macc_ps(dy10,fscal,fjy0);
896             fjz0             = _mm_macc_ps(dz10,fscal,fjz0);
897
898             /**************************
899              * CALCULATE INTERACTIONS *
900              **************************/
901
902             /* Compute parameters for interactions between i and j atoms */
903             qq20             = _mm_mul_ps(iq2,jq0);
904
905             /* REACTION-FIELD ELECTROSTATICS */
906             felec            = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
907
908             fscal            = felec;
909
910             fscal            = _mm_andnot_ps(dummy_mask,fscal);
911
912              /* Update vectorial force */
913             fix2             = _mm_macc_ps(dx20,fscal,fix2);
914             fiy2             = _mm_macc_ps(dy20,fscal,fiy2);
915             fiz2             = _mm_macc_ps(dz20,fscal,fiz2);
916
917             fjx0             = _mm_macc_ps(dx20,fscal,fjx0);
918             fjy0             = _mm_macc_ps(dy20,fscal,fjy0);
919             fjz0             = _mm_macc_ps(dz20,fscal,fjz0);
920
921             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
922             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
923             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
924             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
925
926             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
927
928             /* Inner loop uses 97 flops */
929         }
930
931         /* End of innermost loop */
932
933         gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
934                                               f+i_coord_offset,fshift+i_shift_offset);
935
936         /* Increment number of inner iterations */
937         inneriter                  += j_index_end - j_index_start;
938
939         /* Outer loop uses 18 flops */
940     }
941
942     /* Increment number of outer iterations */
943     outeriter        += nri;
944
945     /* Update outer/inner flops */
946
947     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*97);
948 }