2 * Note: this file was generated by the Gromacs avx_128_fma_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_avx_128_fma_single.h"
34 #include "kernelutil_x86_avx_128_fma_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwNone_GeomP1P1_VF_avx_128_fma_single
38 * Electrostatics interaction: Coulomb
39 * VdW interaction: None
40 * Geometry: Particle-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecCoul_VdwNone_GeomP1P1_VF_avx_128_fma_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
71 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
72 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
73 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
74 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
76 __m128 dummy_mask,cutoff_mask;
77 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
78 __m128 one = _mm_set1_ps(1.0);
79 __m128 two = _mm_set1_ps(2.0);
85 jindex = nlist->jindex;
87 shiftidx = nlist->shift;
89 shiftvec = fr->shift_vec[0];
90 fshift = fr->fshift[0];
91 facel = _mm_set1_ps(fr->epsfac);
92 charge = mdatoms->chargeA;
94 /* Avoid stupid compiler warnings */
95 jnrA = jnrB = jnrC = jnrD = 0;
104 for(iidx=0;iidx<4*DIM;iidx++)
109 /* Start outer loop over neighborlists */
110 for(iidx=0; iidx<nri; iidx++)
112 /* Load shift vector for this list */
113 i_shift_offset = DIM*shiftidx[iidx];
115 /* Load limits for loop over neighbors */
116 j_index_start = jindex[iidx];
117 j_index_end = jindex[iidx+1];
119 /* Get outer coordinate index */
121 i_coord_offset = DIM*inr;
123 /* Load i particle coords and add shift vector */
124 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
126 fix0 = _mm_setzero_ps();
127 fiy0 = _mm_setzero_ps();
128 fiz0 = _mm_setzero_ps();
130 /* Load parameters for i particles */
131 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
133 /* Reset potential sums */
134 velecsum = _mm_setzero_ps();
136 /* Start inner kernel loop */
137 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
140 /* Get j neighbor index, and coordinate index */
145 j_coord_offsetA = DIM*jnrA;
146 j_coord_offsetB = DIM*jnrB;
147 j_coord_offsetC = DIM*jnrC;
148 j_coord_offsetD = DIM*jnrD;
150 /* load j atom coordinates */
151 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
152 x+j_coord_offsetC,x+j_coord_offsetD,
155 /* Calculate displacement vector */
156 dx00 = _mm_sub_ps(ix0,jx0);
157 dy00 = _mm_sub_ps(iy0,jy0);
158 dz00 = _mm_sub_ps(iz0,jz0);
160 /* Calculate squared distance and things based on it */
161 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
163 rinv00 = gmx_mm_invsqrt_ps(rsq00);
165 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
167 /* Load parameters for j particles */
168 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
169 charge+jnrC+0,charge+jnrD+0);
171 /**************************
172 * CALCULATE INTERACTIONS *
173 **************************/
175 /* Compute parameters for interactions between i and j atoms */
176 qq00 = _mm_mul_ps(iq0,jq0);
178 /* COULOMB ELECTROSTATICS */
179 velec = _mm_mul_ps(qq00,rinv00);
180 felec = _mm_mul_ps(velec,rinvsq00);
182 /* Update potential sum for this i atom from the interaction with this j atom. */
183 velecsum = _mm_add_ps(velecsum,velec);
187 /* Update vectorial force */
188 fix0 = _mm_macc_ps(dx00,fscal,fix0);
189 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
190 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
192 fjptrA = f+j_coord_offsetA;
193 fjptrB = f+j_coord_offsetB;
194 fjptrC = f+j_coord_offsetC;
195 fjptrD = f+j_coord_offsetD;
196 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
197 _mm_mul_ps(dx00,fscal),
198 _mm_mul_ps(dy00,fscal),
199 _mm_mul_ps(dz00,fscal));
201 /* Inner loop uses 31 flops */
207 /* Get j neighbor index, and coordinate index */
208 jnrlistA = jjnr[jidx];
209 jnrlistB = jjnr[jidx+1];
210 jnrlistC = jjnr[jidx+2];
211 jnrlistD = jjnr[jidx+3];
212 /* Sign of each element will be negative for non-real atoms.
213 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
214 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
216 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
217 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
218 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
219 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
220 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
221 j_coord_offsetA = DIM*jnrA;
222 j_coord_offsetB = DIM*jnrB;
223 j_coord_offsetC = DIM*jnrC;
224 j_coord_offsetD = DIM*jnrD;
226 /* load j atom coordinates */
227 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
228 x+j_coord_offsetC,x+j_coord_offsetD,
231 /* Calculate displacement vector */
232 dx00 = _mm_sub_ps(ix0,jx0);
233 dy00 = _mm_sub_ps(iy0,jy0);
234 dz00 = _mm_sub_ps(iz0,jz0);
236 /* Calculate squared distance and things based on it */
237 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
239 rinv00 = gmx_mm_invsqrt_ps(rsq00);
241 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
243 /* Load parameters for j particles */
244 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
245 charge+jnrC+0,charge+jnrD+0);
247 /**************************
248 * CALCULATE INTERACTIONS *
249 **************************/
251 /* Compute parameters for interactions between i and j atoms */
252 qq00 = _mm_mul_ps(iq0,jq0);
254 /* COULOMB ELECTROSTATICS */
255 velec = _mm_mul_ps(qq00,rinv00);
256 felec = _mm_mul_ps(velec,rinvsq00);
258 /* Update potential sum for this i atom from the interaction with this j atom. */
259 velec = _mm_andnot_ps(dummy_mask,velec);
260 velecsum = _mm_add_ps(velecsum,velec);
264 fscal = _mm_andnot_ps(dummy_mask,fscal);
266 /* Update vectorial force */
267 fix0 = _mm_macc_ps(dx00,fscal,fix0);
268 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
269 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
271 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
272 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
273 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
274 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
275 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
276 _mm_mul_ps(dx00,fscal),
277 _mm_mul_ps(dy00,fscal),
278 _mm_mul_ps(dz00,fscal));
280 /* Inner loop uses 31 flops */
283 /* End of innermost loop */
285 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
286 f+i_coord_offset,fshift+i_shift_offset);
289 /* Update potential energies */
290 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
292 /* Increment number of inner iterations */
293 inneriter += j_index_end - j_index_start;
295 /* Outer loop uses 8 flops */
298 /* Increment number of outer iterations */
301 /* Update outer/inner flops */
303 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*8 + inneriter*31);
306 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwNone_GeomP1P1_F_avx_128_fma_single
307 * Electrostatics interaction: Coulomb
308 * VdW interaction: None
309 * Geometry: Particle-Particle
310 * Calculate force/pot: Force
313 nb_kernel_ElecCoul_VdwNone_GeomP1P1_F_avx_128_fma_single
314 (t_nblist * gmx_restrict nlist,
315 rvec * gmx_restrict xx,
316 rvec * gmx_restrict ff,
317 t_forcerec * gmx_restrict fr,
318 t_mdatoms * gmx_restrict mdatoms,
319 nb_kernel_data_t * gmx_restrict kernel_data,
320 t_nrnb * gmx_restrict nrnb)
322 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
323 * just 0 for non-waters.
324 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
325 * jnr indices corresponding to data put in the four positions in the SIMD register.
327 int i_shift_offset,i_coord_offset,outeriter,inneriter;
328 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
329 int jnrA,jnrB,jnrC,jnrD;
330 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
331 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
332 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
334 real *shiftvec,*fshift,*x,*f;
335 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
337 __m128 fscal,rcutoff,rcutoff2,jidxall;
339 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
340 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
341 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
342 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
343 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
345 __m128 dummy_mask,cutoff_mask;
346 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
347 __m128 one = _mm_set1_ps(1.0);
348 __m128 two = _mm_set1_ps(2.0);
354 jindex = nlist->jindex;
356 shiftidx = nlist->shift;
358 shiftvec = fr->shift_vec[0];
359 fshift = fr->fshift[0];
360 facel = _mm_set1_ps(fr->epsfac);
361 charge = mdatoms->chargeA;
363 /* Avoid stupid compiler warnings */
364 jnrA = jnrB = jnrC = jnrD = 0;
373 for(iidx=0;iidx<4*DIM;iidx++)
378 /* Start outer loop over neighborlists */
379 for(iidx=0; iidx<nri; iidx++)
381 /* Load shift vector for this list */
382 i_shift_offset = DIM*shiftidx[iidx];
384 /* Load limits for loop over neighbors */
385 j_index_start = jindex[iidx];
386 j_index_end = jindex[iidx+1];
388 /* Get outer coordinate index */
390 i_coord_offset = DIM*inr;
392 /* Load i particle coords and add shift vector */
393 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
395 fix0 = _mm_setzero_ps();
396 fiy0 = _mm_setzero_ps();
397 fiz0 = _mm_setzero_ps();
399 /* Load parameters for i particles */
400 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
402 /* Start inner kernel loop */
403 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
406 /* Get j neighbor index, and coordinate index */
411 j_coord_offsetA = DIM*jnrA;
412 j_coord_offsetB = DIM*jnrB;
413 j_coord_offsetC = DIM*jnrC;
414 j_coord_offsetD = DIM*jnrD;
416 /* load j atom coordinates */
417 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
418 x+j_coord_offsetC,x+j_coord_offsetD,
421 /* Calculate displacement vector */
422 dx00 = _mm_sub_ps(ix0,jx0);
423 dy00 = _mm_sub_ps(iy0,jy0);
424 dz00 = _mm_sub_ps(iz0,jz0);
426 /* Calculate squared distance and things based on it */
427 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
429 rinv00 = gmx_mm_invsqrt_ps(rsq00);
431 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
433 /* Load parameters for j particles */
434 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
435 charge+jnrC+0,charge+jnrD+0);
437 /**************************
438 * CALCULATE INTERACTIONS *
439 **************************/
441 /* Compute parameters for interactions between i and j atoms */
442 qq00 = _mm_mul_ps(iq0,jq0);
444 /* COULOMB ELECTROSTATICS */
445 velec = _mm_mul_ps(qq00,rinv00);
446 felec = _mm_mul_ps(velec,rinvsq00);
450 /* Update vectorial force */
451 fix0 = _mm_macc_ps(dx00,fscal,fix0);
452 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
453 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
455 fjptrA = f+j_coord_offsetA;
456 fjptrB = f+j_coord_offsetB;
457 fjptrC = f+j_coord_offsetC;
458 fjptrD = f+j_coord_offsetD;
459 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
460 _mm_mul_ps(dx00,fscal),
461 _mm_mul_ps(dy00,fscal),
462 _mm_mul_ps(dz00,fscal));
464 /* Inner loop uses 30 flops */
470 /* Get j neighbor index, and coordinate index */
471 jnrlistA = jjnr[jidx];
472 jnrlistB = jjnr[jidx+1];
473 jnrlistC = jjnr[jidx+2];
474 jnrlistD = jjnr[jidx+3];
475 /* Sign of each element will be negative for non-real atoms.
476 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
477 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
479 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
480 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
481 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
482 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
483 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
484 j_coord_offsetA = DIM*jnrA;
485 j_coord_offsetB = DIM*jnrB;
486 j_coord_offsetC = DIM*jnrC;
487 j_coord_offsetD = DIM*jnrD;
489 /* load j atom coordinates */
490 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
491 x+j_coord_offsetC,x+j_coord_offsetD,
494 /* Calculate displacement vector */
495 dx00 = _mm_sub_ps(ix0,jx0);
496 dy00 = _mm_sub_ps(iy0,jy0);
497 dz00 = _mm_sub_ps(iz0,jz0);
499 /* Calculate squared distance and things based on it */
500 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
502 rinv00 = gmx_mm_invsqrt_ps(rsq00);
504 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
506 /* Load parameters for j particles */
507 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
508 charge+jnrC+0,charge+jnrD+0);
510 /**************************
511 * CALCULATE INTERACTIONS *
512 **************************/
514 /* Compute parameters for interactions between i and j atoms */
515 qq00 = _mm_mul_ps(iq0,jq0);
517 /* COULOMB ELECTROSTATICS */
518 velec = _mm_mul_ps(qq00,rinv00);
519 felec = _mm_mul_ps(velec,rinvsq00);
523 fscal = _mm_andnot_ps(dummy_mask,fscal);
525 /* Update vectorial force */
526 fix0 = _mm_macc_ps(dx00,fscal,fix0);
527 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
528 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
530 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
531 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
532 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
533 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
534 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
535 _mm_mul_ps(dx00,fscal),
536 _mm_mul_ps(dy00,fscal),
537 _mm_mul_ps(dz00,fscal));
539 /* Inner loop uses 30 flops */
542 /* End of innermost loop */
544 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
545 f+i_coord_offset,fshift+i_shift_offset);
547 /* Increment number of inner iterations */
548 inneriter += j_index_end - j_index_start;
550 /* Outer loop uses 7 flops */
553 /* Increment number of outer iterations */
556 /* Update outer/inner flops */
558 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*30);