2 * Note: this file was generated by the Gromacs avx_128_fma_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_avx_128_fma_single.h"
34 #include "kernelutil_x86_avx_128_fma_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3P1_VF_avx_128_fma_single
38 * Electrostatics interaction: Coulomb
39 * VdW interaction: LennardJones
40 * Geometry: Water3-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecCoul_VdwLJ_GeomW3P1_VF_avx_128_fma_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
72 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
75 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
76 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
77 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
78 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
79 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
80 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
83 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
86 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
87 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
88 __m128 dummy_mask,cutoff_mask;
89 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
90 __m128 one = _mm_set1_ps(1.0);
91 __m128 two = _mm_set1_ps(2.0);
97 jindex = nlist->jindex;
99 shiftidx = nlist->shift;
101 shiftvec = fr->shift_vec[0];
102 fshift = fr->fshift[0];
103 facel = _mm_set1_ps(fr->epsfac);
104 charge = mdatoms->chargeA;
105 nvdwtype = fr->ntype;
107 vdwtype = mdatoms->typeA;
109 /* Setup water-specific parameters */
110 inr = nlist->iinr[0];
111 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
112 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
113 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
114 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
116 /* Avoid stupid compiler warnings */
117 jnrA = jnrB = jnrC = jnrD = 0;
126 for(iidx=0;iidx<4*DIM;iidx++)
131 /* Start outer loop over neighborlists */
132 for(iidx=0; iidx<nri; iidx++)
134 /* Load shift vector for this list */
135 i_shift_offset = DIM*shiftidx[iidx];
137 /* Load limits for loop over neighbors */
138 j_index_start = jindex[iidx];
139 j_index_end = jindex[iidx+1];
141 /* Get outer coordinate index */
143 i_coord_offset = DIM*inr;
145 /* Load i particle coords and add shift vector */
146 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
147 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
149 fix0 = _mm_setzero_ps();
150 fiy0 = _mm_setzero_ps();
151 fiz0 = _mm_setzero_ps();
152 fix1 = _mm_setzero_ps();
153 fiy1 = _mm_setzero_ps();
154 fiz1 = _mm_setzero_ps();
155 fix2 = _mm_setzero_ps();
156 fiy2 = _mm_setzero_ps();
157 fiz2 = _mm_setzero_ps();
159 /* Reset potential sums */
160 velecsum = _mm_setzero_ps();
161 vvdwsum = _mm_setzero_ps();
163 /* Start inner kernel loop */
164 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
167 /* Get j neighbor index, and coordinate index */
172 j_coord_offsetA = DIM*jnrA;
173 j_coord_offsetB = DIM*jnrB;
174 j_coord_offsetC = DIM*jnrC;
175 j_coord_offsetD = DIM*jnrD;
177 /* load j atom coordinates */
178 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
179 x+j_coord_offsetC,x+j_coord_offsetD,
182 /* Calculate displacement vector */
183 dx00 = _mm_sub_ps(ix0,jx0);
184 dy00 = _mm_sub_ps(iy0,jy0);
185 dz00 = _mm_sub_ps(iz0,jz0);
186 dx10 = _mm_sub_ps(ix1,jx0);
187 dy10 = _mm_sub_ps(iy1,jy0);
188 dz10 = _mm_sub_ps(iz1,jz0);
189 dx20 = _mm_sub_ps(ix2,jx0);
190 dy20 = _mm_sub_ps(iy2,jy0);
191 dz20 = _mm_sub_ps(iz2,jz0);
193 /* Calculate squared distance and things based on it */
194 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
195 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
196 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
198 rinv00 = gmx_mm_invsqrt_ps(rsq00);
199 rinv10 = gmx_mm_invsqrt_ps(rsq10);
200 rinv20 = gmx_mm_invsqrt_ps(rsq20);
202 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
203 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
204 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
206 /* Load parameters for j particles */
207 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
208 charge+jnrC+0,charge+jnrD+0);
209 vdwjidx0A = 2*vdwtype[jnrA+0];
210 vdwjidx0B = 2*vdwtype[jnrB+0];
211 vdwjidx0C = 2*vdwtype[jnrC+0];
212 vdwjidx0D = 2*vdwtype[jnrD+0];
214 fjx0 = _mm_setzero_ps();
215 fjy0 = _mm_setzero_ps();
216 fjz0 = _mm_setzero_ps();
218 /**************************
219 * CALCULATE INTERACTIONS *
220 **************************/
222 /* Compute parameters for interactions between i and j atoms */
223 qq00 = _mm_mul_ps(iq0,jq0);
224 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
225 vdwparam+vdwioffset0+vdwjidx0B,
226 vdwparam+vdwioffset0+vdwjidx0C,
227 vdwparam+vdwioffset0+vdwjidx0D,
230 /* COULOMB ELECTROSTATICS */
231 velec = _mm_mul_ps(qq00,rinv00);
232 felec = _mm_mul_ps(velec,rinvsq00);
234 /* LENNARD-JONES DISPERSION/REPULSION */
236 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
237 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
238 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
239 vvdw = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
240 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
242 /* Update potential sum for this i atom from the interaction with this j atom. */
243 velecsum = _mm_add_ps(velecsum,velec);
244 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
246 fscal = _mm_add_ps(felec,fvdw);
248 /* Update vectorial force */
249 fix0 = _mm_macc_ps(dx00,fscal,fix0);
250 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
251 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
253 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
254 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
255 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
257 /**************************
258 * CALCULATE INTERACTIONS *
259 **************************/
261 /* Compute parameters for interactions between i and j atoms */
262 qq10 = _mm_mul_ps(iq1,jq0);
264 /* COULOMB ELECTROSTATICS */
265 velec = _mm_mul_ps(qq10,rinv10);
266 felec = _mm_mul_ps(velec,rinvsq10);
268 /* Update potential sum for this i atom from the interaction with this j atom. */
269 velecsum = _mm_add_ps(velecsum,velec);
273 /* Update vectorial force */
274 fix1 = _mm_macc_ps(dx10,fscal,fix1);
275 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
276 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
278 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
279 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
280 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
282 /**************************
283 * CALCULATE INTERACTIONS *
284 **************************/
286 /* Compute parameters for interactions between i and j atoms */
287 qq20 = _mm_mul_ps(iq2,jq0);
289 /* COULOMB ELECTROSTATICS */
290 velec = _mm_mul_ps(qq20,rinv20);
291 felec = _mm_mul_ps(velec,rinvsq20);
293 /* Update potential sum for this i atom from the interaction with this j atom. */
294 velecsum = _mm_add_ps(velecsum,velec);
298 /* Update vectorial force */
299 fix2 = _mm_macc_ps(dx20,fscal,fix2);
300 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
301 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
303 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
304 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
305 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
307 fjptrA = f+j_coord_offsetA;
308 fjptrB = f+j_coord_offsetB;
309 fjptrC = f+j_coord_offsetC;
310 fjptrD = f+j_coord_offsetD;
312 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
314 /* Inner loop uses 105 flops */
320 /* Get j neighbor index, and coordinate index */
321 jnrlistA = jjnr[jidx];
322 jnrlistB = jjnr[jidx+1];
323 jnrlistC = jjnr[jidx+2];
324 jnrlistD = jjnr[jidx+3];
325 /* Sign of each element will be negative for non-real atoms.
326 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
327 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
329 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
330 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
331 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
332 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
333 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
334 j_coord_offsetA = DIM*jnrA;
335 j_coord_offsetB = DIM*jnrB;
336 j_coord_offsetC = DIM*jnrC;
337 j_coord_offsetD = DIM*jnrD;
339 /* load j atom coordinates */
340 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
341 x+j_coord_offsetC,x+j_coord_offsetD,
344 /* Calculate displacement vector */
345 dx00 = _mm_sub_ps(ix0,jx0);
346 dy00 = _mm_sub_ps(iy0,jy0);
347 dz00 = _mm_sub_ps(iz0,jz0);
348 dx10 = _mm_sub_ps(ix1,jx0);
349 dy10 = _mm_sub_ps(iy1,jy0);
350 dz10 = _mm_sub_ps(iz1,jz0);
351 dx20 = _mm_sub_ps(ix2,jx0);
352 dy20 = _mm_sub_ps(iy2,jy0);
353 dz20 = _mm_sub_ps(iz2,jz0);
355 /* Calculate squared distance and things based on it */
356 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
357 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
358 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
360 rinv00 = gmx_mm_invsqrt_ps(rsq00);
361 rinv10 = gmx_mm_invsqrt_ps(rsq10);
362 rinv20 = gmx_mm_invsqrt_ps(rsq20);
364 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
365 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
366 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
368 /* Load parameters for j particles */
369 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
370 charge+jnrC+0,charge+jnrD+0);
371 vdwjidx0A = 2*vdwtype[jnrA+0];
372 vdwjidx0B = 2*vdwtype[jnrB+0];
373 vdwjidx0C = 2*vdwtype[jnrC+0];
374 vdwjidx0D = 2*vdwtype[jnrD+0];
376 fjx0 = _mm_setzero_ps();
377 fjy0 = _mm_setzero_ps();
378 fjz0 = _mm_setzero_ps();
380 /**************************
381 * CALCULATE INTERACTIONS *
382 **************************/
384 /* Compute parameters for interactions between i and j atoms */
385 qq00 = _mm_mul_ps(iq0,jq0);
386 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
387 vdwparam+vdwioffset0+vdwjidx0B,
388 vdwparam+vdwioffset0+vdwjidx0C,
389 vdwparam+vdwioffset0+vdwjidx0D,
392 /* COULOMB ELECTROSTATICS */
393 velec = _mm_mul_ps(qq00,rinv00);
394 felec = _mm_mul_ps(velec,rinvsq00);
396 /* LENNARD-JONES DISPERSION/REPULSION */
398 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
399 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
400 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
401 vvdw = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
402 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
404 /* Update potential sum for this i atom from the interaction with this j atom. */
405 velec = _mm_andnot_ps(dummy_mask,velec);
406 velecsum = _mm_add_ps(velecsum,velec);
407 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
408 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
410 fscal = _mm_add_ps(felec,fvdw);
412 fscal = _mm_andnot_ps(dummy_mask,fscal);
414 /* Update vectorial force */
415 fix0 = _mm_macc_ps(dx00,fscal,fix0);
416 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
417 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
419 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
420 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
421 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
423 /**************************
424 * CALCULATE INTERACTIONS *
425 **************************/
427 /* Compute parameters for interactions between i and j atoms */
428 qq10 = _mm_mul_ps(iq1,jq0);
430 /* COULOMB ELECTROSTATICS */
431 velec = _mm_mul_ps(qq10,rinv10);
432 felec = _mm_mul_ps(velec,rinvsq10);
434 /* Update potential sum for this i atom from the interaction with this j atom. */
435 velec = _mm_andnot_ps(dummy_mask,velec);
436 velecsum = _mm_add_ps(velecsum,velec);
440 fscal = _mm_andnot_ps(dummy_mask,fscal);
442 /* Update vectorial force */
443 fix1 = _mm_macc_ps(dx10,fscal,fix1);
444 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
445 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
447 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
448 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
449 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
451 /**************************
452 * CALCULATE INTERACTIONS *
453 **************************/
455 /* Compute parameters for interactions between i and j atoms */
456 qq20 = _mm_mul_ps(iq2,jq0);
458 /* COULOMB ELECTROSTATICS */
459 velec = _mm_mul_ps(qq20,rinv20);
460 felec = _mm_mul_ps(velec,rinvsq20);
462 /* Update potential sum for this i atom from the interaction with this j atom. */
463 velec = _mm_andnot_ps(dummy_mask,velec);
464 velecsum = _mm_add_ps(velecsum,velec);
468 fscal = _mm_andnot_ps(dummy_mask,fscal);
470 /* Update vectorial force */
471 fix2 = _mm_macc_ps(dx20,fscal,fix2);
472 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
473 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
475 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
476 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
477 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
479 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
480 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
481 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
482 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
484 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
486 /* Inner loop uses 105 flops */
489 /* End of innermost loop */
491 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
492 f+i_coord_offset,fshift+i_shift_offset);
495 /* Update potential energies */
496 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
497 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
499 /* Increment number of inner iterations */
500 inneriter += j_index_end - j_index_start;
502 /* Outer loop uses 20 flops */
505 /* Increment number of outer iterations */
508 /* Update outer/inner flops */
510 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*105);
513 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3P1_F_avx_128_fma_single
514 * Electrostatics interaction: Coulomb
515 * VdW interaction: LennardJones
516 * Geometry: Water3-Particle
517 * Calculate force/pot: Force
520 nb_kernel_ElecCoul_VdwLJ_GeomW3P1_F_avx_128_fma_single
521 (t_nblist * gmx_restrict nlist,
522 rvec * gmx_restrict xx,
523 rvec * gmx_restrict ff,
524 t_forcerec * gmx_restrict fr,
525 t_mdatoms * gmx_restrict mdatoms,
526 nb_kernel_data_t * gmx_restrict kernel_data,
527 t_nrnb * gmx_restrict nrnb)
529 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
530 * just 0 for non-waters.
531 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
532 * jnr indices corresponding to data put in the four positions in the SIMD register.
534 int i_shift_offset,i_coord_offset,outeriter,inneriter;
535 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
536 int jnrA,jnrB,jnrC,jnrD;
537 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
538 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
539 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
541 real *shiftvec,*fshift,*x,*f;
542 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
544 __m128 fscal,rcutoff,rcutoff2,jidxall;
546 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
548 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
550 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
551 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
552 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
553 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
554 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
555 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
556 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
559 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
562 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
563 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
564 __m128 dummy_mask,cutoff_mask;
565 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
566 __m128 one = _mm_set1_ps(1.0);
567 __m128 two = _mm_set1_ps(2.0);
573 jindex = nlist->jindex;
575 shiftidx = nlist->shift;
577 shiftvec = fr->shift_vec[0];
578 fshift = fr->fshift[0];
579 facel = _mm_set1_ps(fr->epsfac);
580 charge = mdatoms->chargeA;
581 nvdwtype = fr->ntype;
583 vdwtype = mdatoms->typeA;
585 /* Setup water-specific parameters */
586 inr = nlist->iinr[0];
587 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
588 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
589 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
590 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
592 /* Avoid stupid compiler warnings */
593 jnrA = jnrB = jnrC = jnrD = 0;
602 for(iidx=0;iidx<4*DIM;iidx++)
607 /* Start outer loop over neighborlists */
608 for(iidx=0; iidx<nri; iidx++)
610 /* Load shift vector for this list */
611 i_shift_offset = DIM*shiftidx[iidx];
613 /* Load limits for loop over neighbors */
614 j_index_start = jindex[iidx];
615 j_index_end = jindex[iidx+1];
617 /* Get outer coordinate index */
619 i_coord_offset = DIM*inr;
621 /* Load i particle coords and add shift vector */
622 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
623 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
625 fix0 = _mm_setzero_ps();
626 fiy0 = _mm_setzero_ps();
627 fiz0 = _mm_setzero_ps();
628 fix1 = _mm_setzero_ps();
629 fiy1 = _mm_setzero_ps();
630 fiz1 = _mm_setzero_ps();
631 fix2 = _mm_setzero_ps();
632 fiy2 = _mm_setzero_ps();
633 fiz2 = _mm_setzero_ps();
635 /* Start inner kernel loop */
636 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
639 /* Get j neighbor index, and coordinate index */
644 j_coord_offsetA = DIM*jnrA;
645 j_coord_offsetB = DIM*jnrB;
646 j_coord_offsetC = DIM*jnrC;
647 j_coord_offsetD = DIM*jnrD;
649 /* load j atom coordinates */
650 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
651 x+j_coord_offsetC,x+j_coord_offsetD,
654 /* Calculate displacement vector */
655 dx00 = _mm_sub_ps(ix0,jx0);
656 dy00 = _mm_sub_ps(iy0,jy0);
657 dz00 = _mm_sub_ps(iz0,jz0);
658 dx10 = _mm_sub_ps(ix1,jx0);
659 dy10 = _mm_sub_ps(iy1,jy0);
660 dz10 = _mm_sub_ps(iz1,jz0);
661 dx20 = _mm_sub_ps(ix2,jx0);
662 dy20 = _mm_sub_ps(iy2,jy0);
663 dz20 = _mm_sub_ps(iz2,jz0);
665 /* Calculate squared distance and things based on it */
666 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
667 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
668 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
670 rinv00 = gmx_mm_invsqrt_ps(rsq00);
671 rinv10 = gmx_mm_invsqrt_ps(rsq10);
672 rinv20 = gmx_mm_invsqrt_ps(rsq20);
674 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
675 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
676 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
678 /* Load parameters for j particles */
679 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
680 charge+jnrC+0,charge+jnrD+0);
681 vdwjidx0A = 2*vdwtype[jnrA+0];
682 vdwjidx0B = 2*vdwtype[jnrB+0];
683 vdwjidx0C = 2*vdwtype[jnrC+0];
684 vdwjidx0D = 2*vdwtype[jnrD+0];
686 fjx0 = _mm_setzero_ps();
687 fjy0 = _mm_setzero_ps();
688 fjz0 = _mm_setzero_ps();
690 /**************************
691 * CALCULATE INTERACTIONS *
692 **************************/
694 /* Compute parameters for interactions between i and j atoms */
695 qq00 = _mm_mul_ps(iq0,jq0);
696 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
697 vdwparam+vdwioffset0+vdwjidx0B,
698 vdwparam+vdwioffset0+vdwjidx0C,
699 vdwparam+vdwioffset0+vdwjidx0D,
702 /* COULOMB ELECTROSTATICS */
703 velec = _mm_mul_ps(qq00,rinv00);
704 felec = _mm_mul_ps(velec,rinvsq00);
706 /* LENNARD-JONES DISPERSION/REPULSION */
708 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
709 fvdw = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
711 fscal = _mm_add_ps(felec,fvdw);
713 /* Update vectorial force */
714 fix0 = _mm_macc_ps(dx00,fscal,fix0);
715 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
716 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
718 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
719 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
720 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
722 /**************************
723 * CALCULATE INTERACTIONS *
724 **************************/
726 /* Compute parameters for interactions between i and j atoms */
727 qq10 = _mm_mul_ps(iq1,jq0);
729 /* COULOMB ELECTROSTATICS */
730 velec = _mm_mul_ps(qq10,rinv10);
731 felec = _mm_mul_ps(velec,rinvsq10);
735 /* Update vectorial force */
736 fix1 = _mm_macc_ps(dx10,fscal,fix1);
737 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
738 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
740 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
741 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
742 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
744 /**************************
745 * CALCULATE INTERACTIONS *
746 **************************/
748 /* Compute parameters for interactions between i and j atoms */
749 qq20 = _mm_mul_ps(iq2,jq0);
751 /* COULOMB ELECTROSTATICS */
752 velec = _mm_mul_ps(qq20,rinv20);
753 felec = _mm_mul_ps(velec,rinvsq20);
757 /* Update vectorial force */
758 fix2 = _mm_macc_ps(dx20,fscal,fix2);
759 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
760 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
762 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
763 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
764 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
766 fjptrA = f+j_coord_offsetA;
767 fjptrB = f+j_coord_offsetB;
768 fjptrC = f+j_coord_offsetC;
769 fjptrD = f+j_coord_offsetD;
771 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
773 /* Inner loop uses 97 flops */
779 /* Get j neighbor index, and coordinate index */
780 jnrlistA = jjnr[jidx];
781 jnrlistB = jjnr[jidx+1];
782 jnrlistC = jjnr[jidx+2];
783 jnrlistD = jjnr[jidx+3];
784 /* Sign of each element will be negative for non-real atoms.
785 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
786 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
788 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
789 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
790 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
791 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
792 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
793 j_coord_offsetA = DIM*jnrA;
794 j_coord_offsetB = DIM*jnrB;
795 j_coord_offsetC = DIM*jnrC;
796 j_coord_offsetD = DIM*jnrD;
798 /* load j atom coordinates */
799 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
800 x+j_coord_offsetC,x+j_coord_offsetD,
803 /* Calculate displacement vector */
804 dx00 = _mm_sub_ps(ix0,jx0);
805 dy00 = _mm_sub_ps(iy0,jy0);
806 dz00 = _mm_sub_ps(iz0,jz0);
807 dx10 = _mm_sub_ps(ix1,jx0);
808 dy10 = _mm_sub_ps(iy1,jy0);
809 dz10 = _mm_sub_ps(iz1,jz0);
810 dx20 = _mm_sub_ps(ix2,jx0);
811 dy20 = _mm_sub_ps(iy2,jy0);
812 dz20 = _mm_sub_ps(iz2,jz0);
814 /* Calculate squared distance and things based on it */
815 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
816 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
817 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
819 rinv00 = gmx_mm_invsqrt_ps(rsq00);
820 rinv10 = gmx_mm_invsqrt_ps(rsq10);
821 rinv20 = gmx_mm_invsqrt_ps(rsq20);
823 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
824 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
825 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
827 /* Load parameters for j particles */
828 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
829 charge+jnrC+0,charge+jnrD+0);
830 vdwjidx0A = 2*vdwtype[jnrA+0];
831 vdwjidx0B = 2*vdwtype[jnrB+0];
832 vdwjidx0C = 2*vdwtype[jnrC+0];
833 vdwjidx0D = 2*vdwtype[jnrD+0];
835 fjx0 = _mm_setzero_ps();
836 fjy0 = _mm_setzero_ps();
837 fjz0 = _mm_setzero_ps();
839 /**************************
840 * CALCULATE INTERACTIONS *
841 **************************/
843 /* Compute parameters for interactions between i and j atoms */
844 qq00 = _mm_mul_ps(iq0,jq0);
845 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
846 vdwparam+vdwioffset0+vdwjidx0B,
847 vdwparam+vdwioffset0+vdwjidx0C,
848 vdwparam+vdwioffset0+vdwjidx0D,
851 /* COULOMB ELECTROSTATICS */
852 velec = _mm_mul_ps(qq00,rinv00);
853 felec = _mm_mul_ps(velec,rinvsq00);
855 /* LENNARD-JONES DISPERSION/REPULSION */
857 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
858 fvdw = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
860 fscal = _mm_add_ps(felec,fvdw);
862 fscal = _mm_andnot_ps(dummy_mask,fscal);
864 /* Update vectorial force */
865 fix0 = _mm_macc_ps(dx00,fscal,fix0);
866 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
867 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
869 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
870 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
871 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
873 /**************************
874 * CALCULATE INTERACTIONS *
875 **************************/
877 /* Compute parameters for interactions between i and j atoms */
878 qq10 = _mm_mul_ps(iq1,jq0);
880 /* COULOMB ELECTROSTATICS */
881 velec = _mm_mul_ps(qq10,rinv10);
882 felec = _mm_mul_ps(velec,rinvsq10);
886 fscal = _mm_andnot_ps(dummy_mask,fscal);
888 /* Update vectorial force */
889 fix1 = _mm_macc_ps(dx10,fscal,fix1);
890 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
891 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
893 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
894 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
895 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
897 /**************************
898 * CALCULATE INTERACTIONS *
899 **************************/
901 /* Compute parameters for interactions between i and j atoms */
902 qq20 = _mm_mul_ps(iq2,jq0);
904 /* COULOMB ELECTROSTATICS */
905 velec = _mm_mul_ps(qq20,rinv20);
906 felec = _mm_mul_ps(velec,rinvsq20);
910 fscal = _mm_andnot_ps(dummy_mask,fscal);
912 /* Update vectorial force */
913 fix2 = _mm_macc_ps(dx20,fscal,fix2);
914 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
915 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
917 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
918 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
919 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
921 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
922 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
923 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
924 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
926 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
928 /* Inner loop uses 97 flops */
931 /* End of innermost loop */
933 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
934 f+i_coord_offset,fshift+i_shift_offset);
936 /* Increment number of inner iterations */
937 inneriter += j_index_end - j_index_start;
939 /* Outer loop uses 18 flops */
942 /* Increment number of outer iterations */
945 /* Update outer/inner flops */
947 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*97);