2 * Note: this file was generated by the Gromacs avx_128_fma_double kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_avx_128_fma_double.h"
34 #include "kernelutil_x86_avx_128_fma_double.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwNone_GeomP1P1_VF_avx_128_fma_double
38 * Electrostatics interaction: Ewald
39 * VdW interaction: None
40 * Geometry: Particle-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecEwSh_VdwNone_GeomP1P1_VF_avx_128_fma_double
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
61 int j_coord_offsetA,j_coord_offsetB;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
64 real *shiftvec,*fshift,*x,*f;
65 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
68 int vdwjidx0A,vdwjidx0B;
69 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
70 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
71 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
74 __m128d ewtabscale,eweps,twoeweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
76 __m128d dummy_mask,cutoff_mask;
77 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
78 __m128d one = _mm_set1_pd(1.0);
79 __m128d two = _mm_set1_pd(2.0);
85 jindex = nlist->jindex;
87 shiftidx = nlist->shift;
89 shiftvec = fr->shift_vec[0];
90 fshift = fr->fshift[0];
91 facel = _mm_set1_pd(fr->epsfac);
92 charge = mdatoms->chargeA;
94 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
95 ewtab = fr->ic->tabq_coul_FDV0;
96 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
97 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
99 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
100 rcutoff_scalar = fr->rcoulomb;
101 rcutoff = _mm_set1_pd(rcutoff_scalar);
102 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
104 /* Avoid stupid compiler warnings */
112 /* Start outer loop over neighborlists */
113 for(iidx=0; iidx<nri; iidx++)
115 /* Load shift vector for this list */
116 i_shift_offset = DIM*shiftidx[iidx];
118 /* Load limits for loop over neighbors */
119 j_index_start = jindex[iidx];
120 j_index_end = jindex[iidx+1];
122 /* Get outer coordinate index */
124 i_coord_offset = DIM*inr;
126 /* Load i particle coords and add shift vector */
127 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
129 fix0 = _mm_setzero_pd();
130 fiy0 = _mm_setzero_pd();
131 fiz0 = _mm_setzero_pd();
133 /* Load parameters for i particles */
134 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
136 /* Reset potential sums */
137 velecsum = _mm_setzero_pd();
139 /* Start inner kernel loop */
140 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
143 /* Get j neighbor index, and coordinate index */
146 j_coord_offsetA = DIM*jnrA;
147 j_coord_offsetB = DIM*jnrB;
149 /* load j atom coordinates */
150 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
153 /* Calculate displacement vector */
154 dx00 = _mm_sub_pd(ix0,jx0);
155 dy00 = _mm_sub_pd(iy0,jy0);
156 dz00 = _mm_sub_pd(iz0,jz0);
158 /* Calculate squared distance and things based on it */
159 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
161 rinv00 = gmx_mm_invsqrt_pd(rsq00);
163 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
165 /* Load parameters for j particles */
166 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
168 /**************************
169 * CALCULATE INTERACTIONS *
170 **************************/
172 if (gmx_mm_any_lt(rsq00,rcutoff2))
175 r00 = _mm_mul_pd(rsq00,rinv00);
177 /* Compute parameters for interactions between i and j atoms */
178 qq00 = _mm_mul_pd(iq0,jq0);
180 /* EWALD ELECTROSTATICS */
182 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
183 ewrt = _mm_mul_pd(r00,ewtabscale);
184 ewitab = _mm_cvttpd_epi32(ewrt);
186 eweps = _mm_frcz_pd(ewrt);
188 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
190 twoeweps = _mm_add_pd(eweps,eweps);
191 ewitab = _mm_slli_epi32(ewitab,2);
192 ewtabF = _mm_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
193 ewtabD = _mm_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
194 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
195 ewtabV = _mm_load_sd( ewtab + _mm_extract_epi32(ewitab,0) +2);
196 ewtabFn = _mm_load_sd( ewtab + _mm_extract_epi32(ewitab,1) +2);
197 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
198 felec = _mm_macc_pd(eweps,ewtabD,ewtabF);
199 velec = _mm_nmacc_pd(_mm_mul_pd(ewtabhalfspace,eweps) ,_mm_add_pd(ewtabF,felec), ewtabV);
200 velec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_sub_pd(rinv00,sh_ewald),velec));
201 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
203 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
205 /* Update potential sum for this i atom from the interaction with this j atom. */
206 velec = _mm_and_pd(velec,cutoff_mask);
207 velecsum = _mm_add_pd(velecsum,velec);
211 fscal = _mm_and_pd(fscal,cutoff_mask);
213 /* Update vectorial force */
214 fix0 = _mm_macc_pd(dx00,fscal,fix0);
215 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
216 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
218 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,
219 _mm_mul_pd(dx00,fscal),
220 _mm_mul_pd(dy00,fscal),
221 _mm_mul_pd(dz00,fscal));
225 /* Inner loop uses 49 flops */
232 j_coord_offsetA = DIM*jnrA;
234 /* load j atom coordinates */
235 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
238 /* Calculate displacement vector */
239 dx00 = _mm_sub_pd(ix0,jx0);
240 dy00 = _mm_sub_pd(iy0,jy0);
241 dz00 = _mm_sub_pd(iz0,jz0);
243 /* Calculate squared distance and things based on it */
244 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
246 rinv00 = gmx_mm_invsqrt_pd(rsq00);
248 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
250 /* Load parameters for j particles */
251 jq0 = _mm_load_sd(charge+jnrA+0);
253 /**************************
254 * CALCULATE INTERACTIONS *
255 **************************/
257 if (gmx_mm_any_lt(rsq00,rcutoff2))
260 r00 = _mm_mul_pd(rsq00,rinv00);
262 /* Compute parameters for interactions between i and j atoms */
263 qq00 = _mm_mul_pd(iq0,jq0);
265 /* EWALD ELECTROSTATICS */
267 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
268 ewrt = _mm_mul_pd(r00,ewtabscale);
269 ewitab = _mm_cvttpd_epi32(ewrt);
271 eweps = _mm_frcz_pd(ewrt);
273 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
275 twoeweps = _mm_add_pd(eweps,eweps);
276 ewitab = _mm_slli_epi32(ewitab,2);
277 ewtabF = _mm_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
278 ewtabD = _mm_setzero_pd();
279 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
280 ewtabV = _mm_load_sd( ewtab + _mm_extract_epi32(ewitab,0) +2);
281 ewtabFn = _mm_setzero_pd();
282 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
283 felec = _mm_macc_pd(eweps,ewtabD,ewtabF);
284 velec = _mm_nmacc_pd(_mm_mul_pd(ewtabhalfspace,eweps) ,_mm_add_pd(ewtabF,felec), ewtabV);
285 velec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_sub_pd(rinv00,sh_ewald),velec));
286 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
288 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
290 /* Update potential sum for this i atom from the interaction with this j atom. */
291 velec = _mm_and_pd(velec,cutoff_mask);
292 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
293 velecsum = _mm_add_pd(velecsum,velec);
297 fscal = _mm_and_pd(fscal,cutoff_mask);
299 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
301 /* Update vectorial force */
302 fix0 = _mm_macc_pd(dx00,fscal,fix0);
303 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
304 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
306 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,
307 _mm_mul_pd(dx00,fscal),
308 _mm_mul_pd(dy00,fscal),
309 _mm_mul_pd(dz00,fscal));
313 /* Inner loop uses 49 flops */
316 /* End of innermost loop */
318 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
319 f+i_coord_offset,fshift+i_shift_offset);
322 /* Update potential energies */
323 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
325 /* Increment number of inner iterations */
326 inneriter += j_index_end - j_index_start;
328 /* Outer loop uses 8 flops */
331 /* Increment number of outer iterations */
334 /* Update outer/inner flops */
336 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*8 + inneriter*49);
339 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwNone_GeomP1P1_F_avx_128_fma_double
340 * Electrostatics interaction: Ewald
341 * VdW interaction: None
342 * Geometry: Particle-Particle
343 * Calculate force/pot: Force
346 nb_kernel_ElecEwSh_VdwNone_GeomP1P1_F_avx_128_fma_double
347 (t_nblist * gmx_restrict nlist,
348 rvec * gmx_restrict xx,
349 rvec * gmx_restrict ff,
350 t_forcerec * gmx_restrict fr,
351 t_mdatoms * gmx_restrict mdatoms,
352 nb_kernel_data_t * gmx_restrict kernel_data,
353 t_nrnb * gmx_restrict nrnb)
355 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
356 * just 0 for non-waters.
357 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
358 * jnr indices corresponding to data put in the four positions in the SIMD register.
360 int i_shift_offset,i_coord_offset,outeriter,inneriter;
361 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
363 int j_coord_offsetA,j_coord_offsetB;
364 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
366 real *shiftvec,*fshift,*x,*f;
367 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
369 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
370 int vdwjidx0A,vdwjidx0B;
371 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
372 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
373 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
376 __m128d ewtabscale,eweps,twoeweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
378 __m128d dummy_mask,cutoff_mask;
379 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
380 __m128d one = _mm_set1_pd(1.0);
381 __m128d two = _mm_set1_pd(2.0);
387 jindex = nlist->jindex;
389 shiftidx = nlist->shift;
391 shiftvec = fr->shift_vec[0];
392 fshift = fr->fshift[0];
393 facel = _mm_set1_pd(fr->epsfac);
394 charge = mdatoms->chargeA;
396 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
397 ewtab = fr->ic->tabq_coul_F;
398 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
399 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
401 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
402 rcutoff_scalar = fr->rcoulomb;
403 rcutoff = _mm_set1_pd(rcutoff_scalar);
404 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
406 /* Avoid stupid compiler warnings */
414 /* Start outer loop over neighborlists */
415 for(iidx=0; iidx<nri; iidx++)
417 /* Load shift vector for this list */
418 i_shift_offset = DIM*shiftidx[iidx];
420 /* Load limits for loop over neighbors */
421 j_index_start = jindex[iidx];
422 j_index_end = jindex[iidx+1];
424 /* Get outer coordinate index */
426 i_coord_offset = DIM*inr;
428 /* Load i particle coords and add shift vector */
429 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
431 fix0 = _mm_setzero_pd();
432 fiy0 = _mm_setzero_pd();
433 fiz0 = _mm_setzero_pd();
435 /* Load parameters for i particles */
436 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
438 /* Start inner kernel loop */
439 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
442 /* Get j neighbor index, and coordinate index */
445 j_coord_offsetA = DIM*jnrA;
446 j_coord_offsetB = DIM*jnrB;
448 /* load j atom coordinates */
449 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
452 /* Calculate displacement vector */
453 dx00 = _mm_sub_pd(ix0,jx0);
454 dy00 = _mm_sub_pd(iy0,jy0);
455 dz00 = _mm_sub_pd(iz0,jz0);
457 /* Calculate squared distance and things based on it */
458 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
460 rinv00 = gmx_mm_invsqrt_pd(rsq00);
462 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
464 /* Load parameters for j particles */
465 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
467 /**************************
468 * CALCULATE INTERACTIONS *
469 **************************/
471 if (gmx_mm_any_lt(rsq00,rcutoff2))
474 r00 = _mm_mul_pd(rsq00,rinv00);
476 /* Compute parameters for interactions between i and j atoms */
477 qq00 = _mm_mul_pd(iq0,jq0);
479 /* EWALD ELECTROSTATICS */
481 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
482 ewrt = _mm_mul_pd(r00,ewtabscale);
483 ewitab = _mm_cvttpd_epi32(ewrt);
485 eweps = _mm_frcz_pd(ewrt);
487 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
489 twoeweps = _mm_add_pd(eweps,eweps);
490 gmx_mm_load_2pair_swizzle_pd(ewtab+_mm_extract_epi32(ewitab,0),ewtab+_mm_extract_epi32(ewitab,1),
492 felec = _mm_macc_pd(eweps,ewtabFn,_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF));
493 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
495 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
499 fscal = _mm_and_pd(fscal,cutoff_mask);
501 /* Update vectorial force */
502 fix0 = _mm_macc_pd(dx00,fscal,fix0);
503 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
504 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
506 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,
507 _mm_mul_pd(dx00,fscal),
508 _mm_mul_pd(dy00,fscal),
509 _mm_mul_pd(dz00,fscal));
513 /* Inner loop uses 42 flops */
520 j_coord_offsetA = DIM*jnrA;
522 /* load j atom coordinates */
523 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
526 /* Calculate displacement vector */
527 dx00 = _mm_sub_pd(ix0,jx0);
528 dy00 = _mm_sub_pd(iy0,jy0);
529 dz00 = _mm_sub_pd(iz0,jz0);
531 /* Calculate squared distance and things based on it */
532 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
534 rinv00 = gmx_mm_invsqrt_pd(rsq00);
536 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
538 /* Load parameters for j particles */
539 jq0 = _mm_load_sd(charge+jnrA+0);
541 /**************************
542 * CALCULATE INTERACTIONS *
543 **************************/
545 if (gmx_mm_any_lt(rsq00,rcutoff2))
548 r00 = _mm_mul_pd(rsq00,rinv00);
550 /* Compute parameters for interactions between i and j atoms */
551 qq00 = _mm_mul_pd(iq0,jq0);
553 /* EWALD ELECTROSTATICS */
555 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
556 ewrt = _mm_mul_pd(r00,ewtabscale);
557 ewitab = _mm_cvttpd_epi32(ewrt);
559 eweps = _mm_frcz_pd(ewrt);
561 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
563 twoeweps = _mm_add_pd(eweps,eweps);
564 gmx_mm_load_1pair_swizzle_pd(ewtab+_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
565 felec = _mm_macc_pd(eweps,ewtabFn,_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF));
566 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
568 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
572 fscal = _mm_and_pd(fscal,cutoff_mask);
574 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
576 /* Update vectorial force */
577 fix0 = _mm_macc_pd(dx00,fscal,fix0);
578 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
579 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
581 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,
582 _mm_mul_pd(dx00,fscal),
583 _mm_mul_pd(dy00,fscal),
584 _mm_mul_pd(dz00,fscal));
588 /* Inner loop uses 42 flops */
591 /* End of innermost loop */
593 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
594 f+i_coord_offset,fshift+i_shift_offset);
596 /* Increment number of inner iterations */
597 inneriter += j_index_end - j_index_start;
599 /* Outer loop uses 7 flops */
602 /* Increment number of outer iterations */
605 /* Update outer/inner flops */
607 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*42);