3 * This source code is part of
7 * GROningen MAchine for Chemical Simulations
10 * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
11 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
12 * Copyright (c) 2001-2004, The GROMACS development team,
13 * check out http://www.gromacs.org for more information.
15 * This program is free software; you can redistribute it and/or
16 * modify it under the terms of the GNU General Public License
17 * as published by the Free Software Foundation; either version 2
18 * of the License, or (at your option) any later version.
20 * If you want to redistribute modifications, please consider that
21 * scientific software is very special. Version control is crucial -
22 * bugs must be traceable. We will be happy to consider code for
23 * inclusion in the official distribution, but derived work must not
24 * be called official GROMACS. Details are found in the README & COPYING
25 * files - if they are missing, get the official version at www.gromacs.org.
27 * To help us fund GROMACS development, we humbly ask that you cite
28 * the papers on the package - you can find them in the top README file.
30 * For more info, check our website at http://www.gromacs.org
33 * GROningen Mixture of Alchemy and Childrens' Stories
52 result = (a < 0.) ? ((int)(a - half)) : ((int)(a + half));
56 real cuberoot (real x)
60 return (-pow(-x,1.0/DIM));
64 return (pow(x,1.0/DIM));
68 real sign(real x,real y)
76 /* Double and single precision erf() and erfc() from
77 * the Sun Freely Distributable Math Library FDLIBM.
78 * See http://www.netlib.org/fdlibm
79 * Specific file used: s_erf.c, version 1.3 95/01/18
82 * ====================================================
83 * Copyright (C) 1993 by Sun Microsystems, Inc. All rights reserved.
85 * Developed at SunSoft, a Sun Microsystems, Inc. business.
86 * Permission to use, copy, modify, and distribute this
87 * software is freely granted, provided that this notice
89 * ====================================================
92 #if ( (defined SIZEOF_INT && SIZEOF_INT==4) || (SIZEOF_INT_MAX == 2147483647) )
93 typedef int erf_int32_t;
94 typedef unsigned int erf_u_int32_t;
95 #elif (LONG_MAX == 2147483647L)
96 typedef long erf_int32_t;
97 typedef unsigned long erf_u_int32_t;
98 #elif (SHRT_MAX == 2147483647)
99 typedef short erf_int32_t;
100 typedef unsigned short erf_u_int32_t;
102 # error ERROR: No 32 bit wide integer type found!
110 half= 5.00000000000000000000e-01, /* 0x3FE00000, 0x00000000 */
111 one = 1.00000000000000000000e+00, /* 0x3FF00000, 0x00000000 */
112 two = 2.00000000000000000000e+00, /* 0x40000000, 0x00000000 */
113 /* c = (float)0.84506291151 */
114 erx = 8.45062911510467529297e-01, /* 0x3FEB0AC1, 0x60000000 */
116 * Coefficients for approximation to erf on [0,0.84375]
118 efx = 1.28379167095512586316e-01, /* 0x3FC06EBA, 0x8214DB69 */
119 efx8= 1.02703333676410069053e+00, /* 0x3FF06EBA, 0x8214DB69 */
120 pp0 = 1.28379167095512558561e-01, /* 0x3FC06EBA, 0x8214DB68 */
121 pp1 = -3.25042107247001499370e-01, /* 0xBFD4CD7D, 0x691CB913 */
122 pp2 = -2.84817495755985104766e-02, /* 0xBF9D2A51, 0xDBD7194F */
123 pp3 = -5.77027029648944159157e-03, /* 0xBF77A291, 0x236668E4 */
124 pp4 = -2.37630166566501626084e-05, /* 0xBEF8EAD6, 0x120016AC */
125 qq1 = 3.97917223959155352819e-01, /* 0x3FD97779, 0xCDDADC09 */
126 qq2 = 6.50222499887672944485e-02, /* 0x3FB0A54C, 0x5536CEBA */
127 qq3 = 5.08130628187576562776e-03, /* 0x3F74D022, 0xC4D36B0F */
128 qq4 = 1.32494738004321644526e-04, /* 0x3F215DC9, 0x221C1A10 */
129 qq5 = -3.96022827877536812320e-06, /* 0xBED09C43, 0x42A26120 */
131 * Coefficients for approximation to erf in [0.84375,1.25]
133 pa0 = -2.36211856075265944077e-03, /* 0xBF6359B8, 0xBEF77538 */
134 pa1 = 4.14856118683748331666e-01, /* 0x3FDA8D00, 0xAD92B34D */
135 pa2 = -3.72207876035701323847e-01, /* 0xBFD7D240, 0xFBB8C3F1 */
136 pa3 = 3.18346619901161753674e-01, /* 0x3FD45FCA, 0x805120E4 */
137 pa4 = -1.10894694282396677476e-01, /* 0xBFBC6398, 0x3D3E28EC */
138 pa5 = 3.54783043256182359371e-02, /* 0x3FA22A36, 0x599795EB */
139 pa6 = -2.16637559486879084300e-03, /* 0xBF61BF38, 0x0A96073F */
140 qa1 = 1.06420880400844228286e-01, /* 0x3FBB3E66, 0x18EEE323 */
141 qa2 = 5.40397917702171048937e-01, /* 0x3FE14AF0, 0x92EB6F33 */
142 qa3 = 7.18286544141962662868e-02, /* 0x3FB2635C, 0xD99FE9A7 */
143 qa4 = 1.26171219808761642112e-01, /* 0x3FC02660, 0xE763351F */
144 qa5 = 1.36370839120290507362e-02, /* 0x3F8BEDC2, 0x6B51DD1C */
145 qa6 = 1.19844998467991074170e-02, /* 0x3F888B54, 0x5735151D */
147 * Coefficients for approximation to erfc in [1.25,1/0.35]
149 ra0 = -9.86494403484714822705e-03, /* 0xBF843412, 0x600D6435 */
150 ra1 = -6.93858572707181764372e-01, /* 0xBFE63416, 0xE4BA7360 */
151 ra2 = -1.05586262253232909814e+01, /* 0xC0251E04, 0x41B0E726 */
152 ra3 = -6.23753324503260060396e+01, /* 0xC04F300A, 0xE4CBA38D */
153 ra4 = -1.62396669462573470355e+02, /* 0xC0644CB1, 0x84282266 */
154 ra5 = -1.84605092906711035994e+02, /* 0xC067135C, 0xEBCCABB2 */
155 ra6 = -8.12874355063065934246e+01, /* 0xC0545265, 0x57E4D2F2 */
156 ra7 = -9.81432934416914548592e+00, /* 0xC023A0EF, 0xC69AC25C */
157 sa1 = 1.96512716674392571292e+01, /* 0x4033A6B9, 0xBD707687 */
158 sa2 = 1.37657754143519042600e+02, /* 0x4061350C, 0x526AE721 */
159 sa3 = 4.34565877475229228821e+02, /* 0x407B290D, 0xD58A1A71 */
160 sa4 = 6.45387271733267880336e+02, /* 0x40842B19, 0x21EC2868 */
161 sa5 = 4.29008140027567833386e+02, /* 0x407AD021, 0x57700314 */
162 sa6 = 1.08635005541779435134e+02, /* 0x405B28A3, 0xEE48AE2C */
163 sa7 = 6.57024977031928170135e+00, /* 0x401A47EF, 0x8E484A93 */
164 sa8 = -6.04244152148580987438e-02, /* 0xBFAEEFF2, 0xEE749A62 */
166 * Coefficients for approximation to erfc in [1/.35,28]
168 rb0 = -9.86494292470009928597e-03, /* 0xBF843412, 0x39E86F4A */
169 rb1 = -7.99283237680523006574e-01, /* 0xBFE993BA, 0x70C285DE */
170 rb2 = -1.77579549177547519889e+01, /* 0xC031C209, 0x555F995A */
171 rb3 = -1.60636384855821916062e+02, /* 0xC064145D, 0x43C5ED98 */
172 rb4 = -6.37566443368389627722e+02, /* 0xC083EC88, 0x1375F228 */
173 rb5 = -1.02509513161107724954e+03, /* 0xC0900461, 0x6A2E5992 */
174 rb6 = -4.83519191608651397019e+02, /* 0xC07E384E, 0x9BDC383F */
175 sb1 = 3.03380607434824582924e+01, /* 0x403E568B, 0x261D5190 */
176 sb2 = 3.25792512996573918826e+02, /* 0x40745CAE, 0x221B9F0A */
177 sb3 = 1.53672958608443695994e+03, /* 0x409802EB, 0x189D5118 */
178 sb4 = 3.19985821950859553908e+03, /* 0x40A8FFB7, 0x688C246A */
179 sb5 = 2.55305040643316442583e+03, /* 0x40A3F219, 0xCEDF3BE6 */
180 sb6 = 4.74528541206955367215e+02, /* 0x407DA874, 0xE79FE763 */
181 sb7 = -2.24409524465858183362e+01; /* 0xC03670E2, 0x42712D62 */
183 double gmx_erf(double x)
187 double R,S,P,Q,s,y,z,r;
198 /* In release-4-6 and later branches, only the test for
199 * GMX_IEEE754_BIG_ENDIAN_WORD_ORDER will be required. */
200 #if defined(IEEE754_BIG_ENDIAN_WORD_ORDER) || defined(GMX_IEEE754_BIG_ENDIAN_WORD_ORDER)
210 i = ((erf_u_int32_t)hx>>31)<<1;
211 return (double)(1-i)+one/x; /* erf(+-inf)=+-1 */
221 return 0.125*(8.0*x+efx8*x); /*avoid underflow */
225 r = pp0+z*(pp1+z*(pp2+z*(pp3+z*pp4)));
226 s = one+z*(qq1+z*(qq2+z*(qq3+z*(qq4+z*qq5))));
232 /* 0.84375 <= |x| < 1.25 */
234 P = pa0+s*(pa1+s*(pa2+s*(pa3+s*(pa4+s*(pa5+s*pa6)))));
235 Q = one+s*(qa1+s*(qa2+s*(qa3+s*(qa4+s*(qa5+s*qa6)))));
236 if(hx>=0) return erx + P/Q; else return -erx - P/Q;
238 if (ix >= 0x40180000)
241 if(hx>=0) return one-tiny; else return tiny-one;
248 R=ra0+s*(ra1+s*(ra2+s*(ra3+s*(ra4+s*(ra5+s*(ra6+s*ra7))))));
249 S=one+s*(sa1+s*(sa2+s*(sa3+s*(sa4+s*(sa5+s*(sa6+s*(sa7+s*sa8)))))));
254 R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
255 S=one+s*(sb1+s*(sb2+s*(sb3+s*(sb4+s*(sb5+s*(sb6+s*sb7))))));
260 /* In release-4-6 and later branches, only the test for
261 * GMX_IEEE754_BIG_ENDIAN_WORD_ORDER will be required. */
262 #if defined(IEEE754_BIG_ENDIAN_WORD_ORDER) || defined(GMX_IEEE754_BIG_ENDIAN_WORD_ORDER)
270 r = exp(-z*z-0.5625)*exp((z-x)*(z+x)+R/S);
278 double gmx_erfc(double x)
281 double R,S,P,Q,s,y,z,r;
292 /* In release-4-6 and later branches, only the test for
293 * GMX_IEEE754_BIG_ENDIAN_WORD_ORDER will be required. */
294 #if defined(IEEE754_BIG_ENDIAN_WORD_ORDER) || defined(GMX_IEEE754_BIG_ENDIAN_WORD_ORDER)
304 /* erfc(+-inf)=0,2 */
305 return (double)(((erf_u_int32_t)hx>>31)<<1)+one/x;
311 double r1,r2,s1,s2,s3,z2,z4;
312 if(ix < 0x3c700000) /* |x|<2**-56 */
315 r = pp0+z*(pp1+z*(pp2+z*(pp3+z*pp4)));
316 s = one+z*(qq1+z*(qq2+z*(qq3+z*(qq4+z*qq5))));
333 /* 0.84375 <= |x| < 1.25 */
335 P = pa0+s*(pa1+s*(pa2+s*(pa3+s*(pa4+s*(pa5+s*pa6)))));
336 Q = one+s*(qa1+s*(qa2+s*(qa3+s*(qa4+s*(qa5+s*qa6)))));
338 z = one-erx; return z - P/Q;
340 z = erx+P/Q; return one+z;
350 /* |x| < 1/.35 ~ 2.857143*/
351 R=ra0+s*(ra1+s*(ra2+s*(ra3+s*(ra4+s*(ra5+s*(ra6+s*ra7))))));
352 S=one+s*(sa1+s*(sa2+s*(sa3+s*(sa4+s*(sa5+s*(sa6+s*(sa7+s*sa8)))))));
356 /* |x| >= 1/.35 ~ 2.857143 */
357 if(hx<0&&ix>=0x40180000)
358 return two-tiny; /* x < -6 */
359 R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
360 S=one+s*(sb1+s*(sb2+s*(sb3+s*(sb4+s*(sb5+s*(sb6+s*sb7))))));
365 /* In release-4-6 and later branches, only the test for
366 * GMX_IEEE754_BIG_ENDIAN_WORD_ORDER will be required. */
367 #if defined(IEEE754_BIG_ENDIAN_WORD_ORDER) || defined(GMX_IEEE754_BIG_ENDIAN_WORD_ORDER)
375 r = exp(-z*z-0.5625)*exp((z-x)*(z+x)+R/S);
391 #else /* single precision */
397 half= 5.0000000000e-01, /* 0x3F000000 */
398 one = 1.0000000000e+00, /* 0x3F800000 */
399 two = 2.0000000000e+00, /* 0x40000000 */
400 /* c = (subfloat)0.84506291151 */
401 erx = 8.4506291151e-01, /* 0x3f58560b */
403 * Coefficients for approximation to erf on [0,0.84375]
405 efx = 1.2837916613e-01, /* 0x3e0375d4 */
406 efx8= 1.0270333290e+00, /* 0x3f8375d4 */
407 pp0 = 1.2837916613e-01, /* 0x3e0375d4 */
408 pp1 = -3.2504209876e-01, /* 0xbea66beb */
409 pp2 = -2.8481749818e-02, /* 0xbce9528f */
410 pp3 = -5.7702702470e-03, /* 0xbbbd1489 */
411 pp4 = -2.3763017452e-05, /* 0xb7c756b1 */
412 qq1 = 3.9791721106e-01, /* 0x3ecbbbce */
413 qq2 = 6.5022252500e-02, /* 0x3d852a63 */
414 qq3 = 5.0813062117e-03, /* 0x3ba68116 */
415 qq4 = 1.3249473704e-04, /* 0x390aee49 */
416 qq5 = -3.9602282413e-06, /* 0xb684e21a */
418 * Coefficients for approximation to erf in [0.84375,1.25]
420 pa0 = -2.3621185683e-03, /* 0xbb1acdc6 */
421 pa1 = 4.1485610604e-01, /* 0x3ed46805 */
422 pa2 = -3.7220788002e-01, /* 0xbebe9208 */
423 pa3 = 3.1834661961e-01, /* 0x3ea2fe54 */
424 pa4 = -1.1089469492e-01, /* 0xbde31cc2 */
425 pa5 = 3.5478305072e-02, /* 0x3d1151b3 */
426 pa6 = -2.1663755178e-03, /* 0xbb0df9c0 */
427 qa1 = 1.0642088205e-01, /* 0x3dd9f331 */
428 qa2 = 5.4039794207e-01, /* 0x3f0a5785 */
429 qa3 = 7.1828655899e-02, /* 0x3d931ae7 */
430 qa4 = 1.2617121637e-01, /* 0x3e013307 */
431 qa5 = 1.3637083583e-02, /* 0x3c5f6e13 */
432 qa6 = 1.1984500103e-02, /* 0x3c445aa3 */
434 * Coefficients for approximation to erfc in [1.25,1/0.35]
436 ra0 = -9.8649440333e-03, /* 0xbc21a093 */
437 ra1 = -6.9385856390e-01, /* 0xbf31a0b7 */
438 ra2 = -1.0558626175e+01, /* 0xc128f022 */
439 ra3 = -6.2375331879e+01, /* 0xc2798057 */
440 ra4 = -1.6239666748e+02, /* 0xc322658c */
441 ra5 = -1.8460508728e+02, /* 0xc3389ae7 */
442 ra6 = -8.1287437439e+01, /* 0xc2a2932b */
443 ra7 = -9.8143291473e+00, /* 0xc11d077e */
444 sa1 = 1.9651271820e+01, /* 0x419d35ce */
445 sa2 = 1.3765776062e+02, /* 0x4309a863 */
446 sa3 = 4.3456588745e+02, /* 0x43d9486f */
447 sa4 = 6.4538726807e+02, /* 0x442158c9 */
448 sa5 = 4.2900814819e+02, /* 0x43d6810b */
449 sa6 = 1.0863500214e+02, /* 0x42d9451f */
450 sa7 = 6.5702495575e+00, /* 0x40d23f7c */
451 sa8 = -6.0424413532e-02, /* 0xbd777f97 */
453 * Coefficients for approximation to erfc in [1/.35,28]
455 rb0 = -9.8649431020e-03, /* 0xbc21a092 */
456 rb1 = -7.9928326607e-01, /* 0xbf4c9dd4 */
457 rb2 = -1.7757955551e+01, /* 0xc18e104b */
458 rb3 = -1.6063638306e+02, /* 0xc320a2ea */
459 rb4 = -6.3756646729e+02, /* 0xc41f6441 */
460 rb5 = -1.0250950928e+03, /* 0xc480230b */
461 rb6 = -4.8351919556e+02, /* 0xc3f1c275 */
462 sb1 = 3.0338060379e+01, /* 0x41f2b459 */
463 sb2 = 3.2579251099e+02, /* 0x43a2e571 */
464 sb3 = 1.5367296143e+03, /* 0x44c01759 */
465 sb4 = 3.1998581543e+03, /* 0x4547fdbb */
466 sb5 = 2.5530502930e+03, /* 0x451f90ce */
467 sb6 = 4.7452853394e+02, /* 0x43ed43a7 */
468 sb7 = -2.2440952301e+01; /* 0xc1b38712 */
475 } ieee_float_shape_type;
477 #define GET_FLOAT_WORD(i,d) \
479 ieee_float_shape_type gf_u; \
485 #define SET_FLOAT_WORD(d,i) \
487 ieee_float_shape_type sf_u; \
493 float gmx_erf(float x)
496 float R,S,P,Q,s,y,z,r;
512 i = ((erf_u_int32_t)hx>>31)<<1;
513 return (float)(1-i)+one/x; /* erf(+-inf)=+-1 */
523 return (float)0.125*((float)8.0*x+efx8*x); /*avoid underflow */
527 r = pp0+z*(pp1+z*(pp2+z*(pp3+z*pp4)));
528 s = one+z*(qq1+z*(qq2+z*(qq3+z*(qq4+z*qq5))));
534 /* 0.84375 <= |x| < 1.25 */
536 P = pa0+s*(pa1+s*(pa2+s*(pa3+s*(pa4+s*(pa5+s*pa6)))));
537 Q = one+s*(qa1+s*(qa2+s*(qa3+s*(qa4+s*(qa5+s*qa6)))));
538 if(hx>=0) return erx + P/Q; else return -erx - P/Q;
540 if (ix >= 0x40c00000)
543 if(hx>=0) return one-tiny; else return tiny-one;
550 R=ra0+s*(ra1+s*(ra2+s*(ra3+s*(ra4+s*(ra5+s*(ra6+s*ra7))))));
551 S=one+s*(sa1+s*(sa2+s*(sa3+s*(sa4+s*(sa5+s*(sa6+s*(sa7+s*sa8)))))));
556 R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
557 S=one+s*(sb1+s*(sb2+s*(sb3+s*(sb4+s*(sb5+s*(sb6+s*sb7))))));
561 conv.i = conv.i & 0xfffff000;
564 r = exp(-z*z-(float)0.5625)*exp((z-x)*(z+x)+R/S);
565 if(hx>=0) return one-r/x; else return r/x-one;
568 float gmx_erfc(float x)
571 float R,S,P,Q,s,y,z,r;
587 /* erfc(+-inf)=0,2 */
588 return (float)(((erf_u_int32_t)hx>>31)<<1)+one/x;
595 return one-x; /* |x|<2**-56 */
597 r = pp0+z*(pp1+z*(pp2+z*(pp3+z*pp4)));
598 s = one+z*(qq1+z*(qq2+z*(qq3+z*(qq4+z*qq5))));
612 /* 0.84375 <= |x| < 1.25 */
614 P = pa0+s*(pa1+s*(pa2+s*(pa3+s*(pa4+s*(pa5+s*pa6)))));
615 Q = one+s*(qa1+s*(qa2+s*(qa3+s*(qa4+s*(qa5+s*qa6)))));
617 z = one-erx; return z - P/Q;
619 z = erx+P/Q; return one+z;
629 /* |x| < 1/.35 ~ 2.857143*/
630 R=ra0+s*(ra1+s*(ra2+s*(ra3+s*(ra4+s*(ra5+s*(ra6+s*ra7))))));
631 S=one+s*(sa1+s*(sa2+s*(sa3+s*(sa4+s*(sa5+s*(sa6+s*(sa7+s*sa8)))))));
633 /* |x| >= 1/.35 ~ 2.857143 */
634 if(hx<0&&ix>=0x40c00000) return two-tiny;/* x < -6 */
635 R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
636 S=one+s*(sb1+s*(sb2+s*(sb3+s*(sb4+s*(sb5+s*(sb6+s*sb7))))));
640 conv.i = conv.i & 0xfffff000;
643 r = exp(-z*z-(float)0.5625)*exp((z-x)*(z+x)+R/S);
644 if(hx>0) return r/x; else return two-r/x;
646 if(hx>0) return tiny*tiny; else return two-tiny;
652 gmx_bool gmx_isfinite(real x)
654 gmx_bool returnval = TRUE;
655 /* If no suitable function was found, assume the value is
659 returnval = isfinite(x);
660 #elif defined HAVE__ISFINITE
661 returnval = _isfinite(x);
662 #elif defined HAVE__FINITE
663 returnval = _finite(x);
669 check_int_multiply_for_overflow(gmx_large_int_t a,
671 gmx_large_int_t *result)
673 gmx_large_int_t sign = 1;
674 if((0 == a) || (0 == b))
689 if(GMX_LARGE_INT_MAX / b < a)
691 *result = (sign > 0) ? GMX_LARGE_INT_MAX : GMX_LARGE_INT_MIN;
694 *result = sign * a * b;