3 * This source code is part of
7 * GROningen MAchine for Chemical Simulations
9 * VERSION 3.3.99_development_20071104
10 * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
11 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
12 * Copyright (c) 2001-2006, The GROMACS development team,
13 * check out http://www.gromacs.org for more information.
15 * This program is free software; you can redistribute it and/or
16 * modify it under the terms of the GNU General Public License
17 * as published by the Free Software Foundation; either version 2
18 * of the License, or (at your option) any later version.
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30 * For more info, check our website at http://www.gromacs.org
33 * Groningen Machine for Chemical Simulation
45 * This program is needed to create the files:
48 * for the html and latex manuals.
49 * It should be ran with the option: -hidden
52 int main(int argc,char *argv[])
54 const char *desc[] = {
55 "All GROMACS programs have 6 standard options,",
56 "of which some are hidden by default:"
59 const char *bugs[] = {
60 "If the configuration script found Motif or Lesstif on your system, "
61 "you can use the graphical interface (if not, you will get an error):[BR]"
62 "[TT]-X[tt] gmx_bool [TT]no[tt] Use dialog box GUI to edit command line options",
64 "When compiled on an SGI-IRIX system, all GROMACS programs have an "
65 "additional option:[BR]"
66 "[TT]-npri[tt] int [TT]0[tt] Set non blocking priority (try 128)",
68 "Optional files are not used unless the option is set, in contrast to "
69 "non optional files, where the default file name is used when the "
72 "All GROMACS programs will accept file options without a file extension "
73 "or filename being specified. In such cases the default filenames will "
74 "be used. With multiple input file types, such as generic structure "
75 "format, the directory will be searched for files of each type with the "
76 "supplied or default name. When no such file is found, or with output "
77 "files the first file type will be used.",
79 "All GROMACS programs with the exception of [TT]mdrun[tt] "
80 "and [TT]eneconv[tt] check if the command line options "
81 "are valid. If this is not the case, the program will be halted.",
83 "Enumerated options (enum) should be used with one of the arguments "
84 "listed in the option description, the argument may be abbreviated. "
85 "The first match to the shortest argument in the list will be selected.",
87 "Vector options can be used with 1 or 3 parameters. When only one "
88 "parameter is supplied the two others are also set to this value.",
90 "All GROMACS programs can read compressed or g-zipped files. There "
91 "might be a problem with reading compressed [TT].xtc[tt], "
92 "[TT].trr[tt] and [TT].trj[tt] files, but these will not compress "
95 "Most GROMACS programs can process a trajectory with less atoms than "
96 "the run input or structure file, but only if the trajectory consists "
97 "of the first n atoms of the run input or structure file.",
99 "Many GROMACS programs will accept the [TT]-tu[tt] option to set the "
100 "time units to use in output files (e.g. for [TT]xmgr[tt] graphs or "
101 "[TT]xpm[tt] matrices) and in all time options."
104 output_env_t oenv=NULL;
105 CopyRight(stderr,argv[0]);
106 parse_common_args(&argc,argv,0,
107 0,NULL,0,NULL,asize(desc),desc,asize(bugs),bugs,&oenv);