1 # Makefile.in generated automatically by automake 1.4-p1 from Makefile.am
3 # Copyright (C) 1994, 1995-8, 1999 Free Software Foundation, Inc.
4 # This Makefile.in is free software; the Free Software Foundation
5 # gives unlimited permission to copy and/or distribute it,
6 # with or without modifications, as long as this notice is preserved.
8 # This program is distributed in the hope that it will be useful,
9 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
10 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
14 # Don't edit - this file is generated automatically from Makefile.am
19 # Don't edit - this file is generated automatically from Makefile.am
22 # The asm suffix is for intel syntax assembly, and
23 # the s suffix for at & t syntax.
24 # S suffix files will be preprocessed by cpp, nasm
25 # on the other hand can do this directly.
31 top_srcdir = @top_srcdir@
34 exec_prefix = @exec_prefix@
38 libexecdir = @libexecdir@
40 sysconfdir = @sysconfdir@
41 sharedstatedir = @sharedstatedir@
42 localstatedir = @localstatedir@
46 includedir = @includedir@
47 oldincludedir = /usr/include
51 pkgdatadir = $(datadir)/@PACKAGE@
52 pkglibdir = $(libdir)/@PACKAGE@
53 pkgincludedir = $(includedir)/@PACKAGE@
60 AUTOHEADER = @AUTOHEADER@
63 INSTALL_PROGRAM = @INSTALL_PROGRAM@ $(AM_INSTALL_PROGRAM_FLAGS)
64 INSTALL_DATA = @INSTALL_DATA@
65 INSTALL_SCRIPT = @INSTALL_SCRIPT@
66 transform = @program_transform_name@
74 host_alias = @host_alias@
76 AXP_ASM_OBJ = @AXP_ASM_OBJ@
83 INNER_C_OBJ = @INNER_C_OBJ@
84 INNER_F77_OBJ = @INNER_F77_OBJ@
86 MOTIF_OBJ = @MOTIF_OBJ@
89 NASMFLAGS = @NASMFLAGS@
97 X86_ASM_OBJ = @X86_ASM_OBJ@
102 SUFFIXES = .asm .S .F
105 # We need a second compile command producing executables
106 # that can be run on the local host to make the innerloops.
107 # In most cases this is identical to the normal one, but not
108 # for cross-compilation. We also need it on parallel machines
109 # where the MPI executables cannot be run outside a batch queue.
111 # This might be bad - but I don't know any other way to enable
112 # us to type make <progname> in subdirs right now
113 #AM_CPPFLAGS = -DHAVE_CONFIG_H
115 BUILD_COMPILE = $(BUILD_CC) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
117 # This is necessary for VPATH to work,
118 # but it can probably be done in a nicer way...
119 INCLUDES = @INCLUDES@ -I$(top_srcdir)/src/include
120 LDFLAGS = @LDFLAGS@ -L${top_builddir}/src/gmxlib -L${top_builddir}/src/mdlib
121 LDADD = -lmdXXX_SUFFIX_XXX -lgmxXXX_SUFFIX_XXX
123 # NB: The programs in contrib do not get double/mpi suffixes automatically,
124 # to make it easier for new developers to understand this file. If you want
125 # to have it, append "XXX_SUFFIX_XXX" to the program name.
126 # These programs are not compiled or installed by default - you will have to
127 # issue "make <program>" and copy the binary to the correct location yourself!
128 # Add new entries in Makefile.am!
130 EXTRA_PROGRAMS = xmdrun sigeps mk6_n copyrgt mkyaw prfn eanal hrefify mkice total hexamer optwat addquote do_shift g_anavel my_dssp anaf listquotes
133 xmdrun_SOURCES = xmdrun.c do_gct.c init_sh.c gctio.c glaasje.c ionize.c relax_sh.c
135 copyrgt_SOURCES = copyrgt.c
137 sigeps_SOURCES = sigeps.c
139 mk6_n_SOURCES = mk6_n.c
141 my_dssp_SOURCES = my_dssp.c dsspcore.c
143 hrefify_SOURCES = hrefify.c
145 total_SOURCES = total.f
147 optwat_SOURCES = optwat.c
149 hexamer_SOURCES = hexamer.c
151 do_shift_SOURCES = do_shift.c
153 anaf_SOURCES = anaf.c
155 mkyaw_SOURCES = mkyaw.c
157 mkice_SOURCES = mkice.c
159 prfn_SOURCES = prfn.c
161 g_anavel_SOURCES = g_anavel.c
163 addquote_SOURCES = addquote.c
165 listquotes_SOURCES = listquotes.c
167 eanal_SOURCES = eanal.o
169 # clean things explicitly, since the target names might have changed
170 CLEANFILES = ${bin_PROGRAMS} ${EXTRA_PROGRAMS} *_mpi *_d *~ \\\#*
172 mkinstalldirs = $(SHELL) $(top_srcdir)/./config/mkinstalldirs
173 CONFIG_HEADER = ../../src/include/config.h
176 DEFS = @DEFS@ -I. -I$(srcdir) -I../../src/include
177 CPPFLAGS = @CPPFLAGS@
179 X_CFLAGS = @X_CFLAGS@
181 X_EXTRA_LIBS = @X_EXTRA_LIBS@
182 X_PRE_LIBS = @X_PRE_LIBS@
183 xmdrun_OBJECTS = xmdrun.o do_gct.o init_sh.o gctio.o glaasje.o ionize.o \
185 xmdrun_LDADD = $(LDADD)
186 xmdrun_DEPENDENCIES =
188 sigeps_OBJECTS = sigeps.o
189 sigeps_LDADD = $(LDADD)
190 sigeps_DEPENDENCIES =
192 mk6_n_OBJECTS = mk6_n.o
193 mk6_n_LDADD = $(LDADD)
196 copyrgt_OBJECTS = copyrgt.o
197 copyrgt_LDADD = $(LDADD)
198 copyrgt_DEPENDENCIES =
200 mkyaw_OBJECTS = mkyaw.o
201 mkyaw_LDADD = $(LDADD)
204 prfn_OBJECTS = prfn.o
205 prfn_LDADD = $(LDADD)
209 eanal_LDADD = $(LDADD)
212 hrefify_OBJECTS = hrefify.o
213 hrefify_LDADD = $(LDADD)
214 hrefify_DEPENDENCIES =
216 mkice_OBJECTS = mkice.o
217 mkice_LDADD = $(LDADD)
220 total_OBJECTS = total.o
221 total_LDADD = $(LDADD)
224 hexamer_OBJECTS = hexamer.o
225 hexamer_LDADD = $(LDADD)
226 hexamer_DEPENDENCIES =
228 optwat_OBJECTS = optwat.o
229 optwat_LDADD = $(LDADD)
230 optwat_DEPENDENCIES =
232 addquote_OBJECTS = addquote.o
233 addquote_LDADD = $(LDADD)
234 addquote_DEPENDENCIES =
236 do_shift_OBJECTS = do_shift.o
237 do_shift_LDADD = $(LDADD)
238 do_shift_DEPENDENCIES =
240 g_anavel_OBJECTS = g_anavel.o
241 g_anavel_LDADD = $(LDADD)
242 g_anavel_DEPENDENCIES =
244 my_dssp_OBJECTS = my_dssp.o dsspcore.o
245 my_dssp_LDADD = $(LDADD)
246 my_dssp_DEPENDENCIES =
248 anaf_OBJECTS = anaf.o
249 anaf_LDADD = $(LDADD)
252 listquotes_OBJECTS = listquotes.o
253 listquotes_LDADD = $(LDADD)
254 listquotes_DEPENDENCIES =
257 F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS)
259 F77LINK = $(F77LD) $(AM_FFLAGS) $(FFLAGS) $(LDFLAGS) -o $@
261 COMPILE = $(CC) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
263 LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(LDFLAGS) -o $@
264 DIST_COMMON = README Makefile.am Makefile.in
267 DISTFILES = $(DIST_COMMON) $(SOURCES) $(HEADERS) $(TEXINFOS) $(EXTRA_DIST)
271 DEP_FILES = .deps/addquote.P .deps/anaf.P .deps/copyrgt.P \
272 .deps/do_gct.P .deps/do_shift.P .deps/dsspcore.P .deps/g_anavel.P \
273 .deps/gctio.P .deps/glaasje.P .deps/hexamer.P .deps/hrefify.P \
274 .deps/init_sh.P .deps/ionize.P .deps/listquotes.P .deps/mk6_n.P \
275 .deps/mkice.P .deps/mkyaw.P .deps/my_dssp.P .deps/optwat.P .deps/prfn.P \
276 .deps/relax_sh.P .deps/sigeps.P .deps/total.P .deps/xmdrun.P
277 SOURCES = $(xmdrun_SOURCES) $(sigeps_SOURCES) $(mk6_n_SOURCES) $(copyrgt_SOURCES) $(mkyaw_SOURCES) $(prfn_SOURCES) $(eanal_SOURCES) $(hrefify_SOURCES) $(mkice_SOURCES) $(total_SOURCES) $(hexamer_SOURCES) $(optwat_SOURCES) $(addquote_SOURCES) $(do_shift_SOURCES) $(g_anavel_SOURCES) $(my_dssp_SOURCES) $(anaf_SOURCES) $(listquotes_SOURCES)
278 OBJECTS = $(xmdrun_OBJECTS) $(sigeps_OBJECTS) $(mk6_n_OBJECTS) $(copyrgt_OBJECTS) $(mkyaw_OBJECTS) $(prfn_OBJECTS) $(eanal_OBJECTS) $(hrefify_OBJECTS) $(mkice_OBJECTS) $(total_OBJECTS) $(hexamer_OBJECTS) $(optwat_OBJECTS) $(addquote_OBJECTS) $(do_shift_OBJECTS) $(g_anavel_OBJECTS) $(my_dssp_OBJECTS) $(anaf_OBJECTS) $(listquotes_OBJECTS)
282 .SUFFIXES: .F .S .asm .c .f .o .s
283 $(srcdir)/Makefile.in: Makefile.am $(top_srcdir)/configure.in $(ACLOCAL_M4) $(srcdir)/../Makefile.inc
284 cd $(top_srcdir) && $(AUTOMAKE) --gnu src/contrib/Makefile
286 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status $(BUILT_SOURCES)
288 && CONFIG_FILES=$(subdir)/$@ CONFIG_HEADERS= $(SHELL) ./config.status
298 -rm -f *.o core *.core
305 maintainer-clean-compile:
307 xmdrun: $(xmdrun_OBJECTS) $(xmdrun_DEPENDENCIES)
309 $(LINK) $(xmdrun_LDFLAGS) $(xmdrun_OBJECTS) $(xmdrun_LDADD) $(LIBS)
311 sigeps: $(sigeps_OBJECTS) $(sigeps_DEPENDENCIES)
313 $(LINK) $(sigeps_LDFLAGS) $(sigeps_OBJECTS) $(sigeps_LDADD) $(LIBS)
315 mk6_n: $(mk6_n_OBJECTS) $(mk6_n_DEPENDENCIES)
317 $(LINK) $(mk6_n_LDFLAGS) $(mk6_n_OBJECTS) $(mk6_n_LDADD) $(LIBS)
319 copyrgt: $(copyrgt_OBJECTS) $(copyrgt_DEPENDENCIES)
321 $(LINK) $(copyrgt_LDFLAGS) $(copyrgt_OBJECTS) $(copyrgt_LDADD) $(LIBS)
323 mkyaw: $(mkyaw_OBJECTS) $(mkyaw_DEPENDENCIES)
325 $(LINK) $(mkyaw_LDFLAGS) $(mkyaw_OBJECTS) $(mkyaw_LDADD) $(LIBS)
327 prfn: $(prfn_OBJECTS) $(prfn_DEPENDENCIES)
329 $(LINK) $(prfn_LDFLAGS) $(prfn_OBJECTS) $(prfn_LDADD) $(LIBS)
331 eanal: $(eanal_OBJECTS) $(eanal_DEPENDENCIES)
333 $(LINK) $(eanal_LDFLAGS) $(eanal_OBJECTS) $(eanal_LDADD) $(LIBS)
335 hrefify: $(hrefify_OBJECTS) $(hrefify_DEPENDENCIES)
337 $(LINK) $(hrefify_LDFLAGS) $(hrefify_OBJECTS) $(hrefify_LDADD) $(LIBS)
339 mkice: $(mkice_OBJECTS) $(mkice_DEPENDENCIES)
341 $(LINK) $(mkice_LDFLAGS) $(mkice_OBJECTS) $(mkice_LDADD) $(LIBS)
343 total: $(total_OBJECTS) $(total_DEPENDENCIES)
345 $(F77LINK) $(total_LDFLAGS) $(total_OBJECTS) $(total_LDADD) $(LIBS)
347 hexamer: $(hexamer_OBJECTS) $(hexamer_DEPENDENCIES)
349 $(LINK) $(hexamer_LDFLAGS) $(hexamer_OBJECTS) $(hexamer_LDADD) $(LIBS)
351 optwat: $(optwat_OBJECTS) $(optwat_DEPENDENCIES)
353 $(LINK) $(optwat_LDFLAGS) $(optwat_OBJECTS) $(optwat_LDADD) $(LIBS)
355 addquote: $(addquote_OBJECTS) $(addquote_DEPENDENCIES)
357 $(LINK) $(addquote_LDFLAGS) $(addquote_OBJECTS) $(addquote_LDADD) $(LIBS)
359 do_shift: $(do_shift_OBJECTS) $(do_shift_DEPENDENCIES)
361 $(LINK) $(do_shift_LDFLAGS) $(do_shift_OBJECTS) $(do_shift_LDADD) $(LIBS)
363 g_anavel: $(g_anavel_OBJECTS) $(g_anavel_DEPENDENCIES)
365 $(LINK) $(g_anavel_LDFLAGS) $(g_anavel_OBJECTS) $(g_anavel_LDADD) $(LIBS)
367 my_dssp: $(my_dssp_OBJECTS) $(my_dssp_DEPENDENCIES)
369 $(LINK) $(my_dssp_LDFLAGS) $(my_dssp_OBJECTS) $(my_dssp_LDADD) $(LIBS)
371 anaf: $(anaf_OBJECTS) $(anaf_DEPENDENCIES)
373 $(LINK) $(anaf_LDFLAGS) $(anaf_OBJECTS) $(anaf_LDADD) $(LIBS)
375 listquotes: $(listquotes_OBJECTS) $(listquotes_DEPENDENCIES)
377 $(LINK) $(listquotes_LDFLAGS) $(listquotes_OBJECTS) $(listquotes_LDADD) $(LIBS)
383 ID: $(HEADERS) $(SOURCES) $(LISP)
384 list='$(SOURCES) $(HEADERS)'; \
385 unique=`for i in $$list; do echo $$i; done | \
386 awk ' { files[$$0] = 1; } \
387 END { for (i in files) print i; }'`; \
388 here=`pwd` && cd $(srcdir) \
389 && mkid -f$$here/ID $$unique $(LISP)
391 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) $(LISP)
394 list='$(SOURCES) $(HEADERS)'; \
395 unique=`for i in $$list; do echo $$i; done | \
396 awk ' { files[$$0] = 1; } \
397 END { for (i in files) print i; }'`; \
398 test -z "$(ETAGS_ARGS)$$unique$(LISP)$$tags" \
399 || (cd $(srcdir) && etags $(ETAGS_ARGS) $$tags $$unique $(LISP) -o $$here/TAGS)
408 maintainer-clean-tags:
410 distdir = $(top_builddir)/$(PACKAGE)-$(VERSION)/$(subdir)
414 distdir: $(DISTFILES)
415 here=`cd $(top_builddir) && pwd`; \
416 top_distdir=`cd $(top_distdir) && pwd`; \
417 distdir=`cd $(distdir) && pwd`; \
419 && $(AUTOMAKE) --include-deps --build-dir=$$here --srcdir-name=$(top_srcdir) --output-dir=$$top_distdir --gnu src/contrib/Makefile
420 @for file in $(DISTFILES); do \
422 if test -d $$d/$$file; then \
423 cp -pr $$d/$$file $(distdir)/$$file; \
425 test -f $(distdir)/$$file \
426 || ln $$d/$$file $(distdir)/$$file 2> /dev/null \
427 || cp -p $$d/$$file $(distdir)/$$file || :; \
431 DEPS_MAGIC := $(shell mkdir .deps > /dev/null 2>&1 || :)
433 -include $(DEP_FILES)
442 maintainer-clean-depend:
445 @echo '$(COMPILE) -c $<'; \
446 $(COMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
447 @-cp .deps/$(*F).pp .deps/$(*F).P; \
448 tr ' ' '\012' < .deps/$(*F).pp \
449 | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
454 @echo '$(LTCOMPILE) -c $<'; \
455 $(LTCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
456 @-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
457 < .deps/$(*F).pp > .deps/$(*F).P; \
458 tr ' ' '\012' < .deps/$(*F).pp \
459 | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
469 installcheck: installcheck-am
471 install-exec: install-exec-am
474 install-data: install-data-am
477 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
480 uninstall: uninstall-am
484 $(MAKE) $(AM_MAKEFLAGS) AM_INSTALL_PROGRAM_FLAGS=-s install
491 -test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
494 -rm -f Makefile $(CONFIG_CLEAN_FILES)
495 -rm -f config.cache config.log stamp-h stamp-h[0-9]*
497 maintainer-clean-generic:
498 mostlyclean-am: mostlyclean-compile mostlyclean-tags mostlyclean-depend \
501 mostlyclean: mostlyclean-am
503 clean-am: clean-compile clean-tags clean-depend clean-generic \
508 distclean-am: distclean-compile distclean-tags distclean-depend \
509 distclean-generic clean-am
511 distclean: distclean-am
513 maintainer-clean-am: maintainer-clean-compile maintainer-clean-tags \
514 maintainer-clean-depend maintainer-clean-generic \
516 @echo "This command is intended for maintainers to use;"
517 @echo "it deletes files that may require special tools to rebuild."
519 maintainer-clean: maintainer-clean-am
521 .PHONY: mostlyclean-compile distclean-compile clean-compile \
522 maintainer-clean-compile tags mostlyclean-tags distclean-tags \
523 clean-tags maintainer-clean-tags distdir mostlyclean-depend \
524 distclean-depend clean-depend maintainer-clean-depend info-am info \
525 dvi-am dvi check check-am installcheck-am installcheck install-exec-am \
526 install-exec install-data-am install-data install-am install \
527 uninstall-am uninstall all-redirect all-am all installdirs \
528 mostlyclean-generic distclean-generic clean-generic \
529 maintainer-clean-generic clean mostlyclean distclean maintainer-clean
532 $(NASM) $(NASMFLAGS) $< -o $@
538 # Tell versions [3.59,3.63) of GNU make to not export all variables.
539 # Otherwise a system limit (for SysV at least) may be exceeded.