1 PROJECT_NAME = @CMAKE_PROJECT_NAME@
2 @INCLUDE = Doxyfile-version
3 LAYOUT_FILE = @CMAKE_CURRENT_SOURCE_DIR@/DoxygenLayout.xml
4 INPUT = @CMAKE_CURRENT_SOURCE_DIR@ \
5 @CMAKE_SOURCE_DIR@/src \
6 @CMAKE_SOURCE_DIR@/share/template
7 FILE_PATTERNS = *.c *.cpp *.h *.md
8 # CUDA files could be included like this, but currently produce a lot of
10 # FILE_PATTERNS += *.cu *.cuh
11 EXAMPLE_PATH = @CMAKE_SOURCE_DIR@
13 EXCLUDE = @CMAKE_SOURCE_DIR@/doxygen/examples \
14 @CMAKE_SOURCE_DIR@/src/contrib \
15 @CMAKE_SOURCE_DIR@/src/external \
16 @CMAKE_SOURCE_DIR@/src/gromacs/legacyheaders/thread_mpi/atomic \
17 @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.cpp \
18 @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.h \
19 @CMAKE_SOURCE_DIR@/src/gromacs/selection/scanner.cpp @NB_KERNEL_DIRS_TO_IGNORE_IN_DOXYGEN@
20 EXCLUDE_SYMBOLS = YY* yy* _gmx_sel_yy*
21 EXCLUDE_SYMBOLS += TEST TEST_F TEST_P TYPED_TEST_CASE TYPED_TEST INSTANTIATE_TEST_CASE_P
22 EXCLUDE_SYMBOLS += MOCK_METHOD* MOCK_CONST_METHOD*
24 STRIP_FROM_PATH = @CMAKE_SOURCE_DIR@
25 STRIP_FROM_INC_PATH = @CMAKE_SOURCE_DIR@/src
26 INCLUDE_PATH = @CMAKE_SOURCE_DIR@/src \
27 @CMAKE_SOURCE_DIR@/src/gromacs/legacyheaders
28 HAVE_DOT = @DOXYGEN_DOT_FOUND@
29 DOT_PATH = @DOXYGEN_DOT_PATH@
30 MSCGEN_PATH = @DOXYGEN_MSCGEN_PATH@
32 ENABLED_SECTIONS = @DOXYGEN_SECTIONS@
35 # Extract documentation also for code in headers within #ifdef __cplusplus
36 PREDEFINED = __cplusplus
37 # This is for thread_mpi to #ifdef some code out that should not be documented.
39 # This makes 'static gmx_inline' functions appear better in the documentation.
40 PREDEFINED += gmx_inline=inline
41 # This is for parser.cpp to make it produce code that Doxygen understands
42 # and that does not have unnecessary function declarations.
43 PREDEFINED += __STDC__ YYMALLOC=malloc YYFREE=free
45 JAVADOC_AUTOBRIEF = YES
46 BUILTIN_STL_SUPPORT = YES
47 INLINE_INHERITED_MEMB = YES
48 SORT_BY_SCOPE_NAME = YES
49 ALPHABETICAL_INDEX = YES
50 HTML_DYNAMIC_SECTIONS = YES
52 # Setting this to NO has a side effect to hide undocumented headers from the
53 # file list, which makes it generally look nicer.
55 STRIP_CODE_COMMENTS = NO
57 EXTRACT_LOCAL_CLASSES = NO
58 # This includes 'static inline' functions from headers in the documentation.
61 ALIASES += Gromacs=GROMACS
63 DOT_IMAGE_FORMAT = svg
64 DOT_MULTI_TARGETS = YES
65 # According to Doxygen docs, this is required for svg support on IE
66 HTML_FILE_EXTENSION = .xhtml