1 PROJECT_NAME = @CMAKE_PROJECT_NAME@
2 @INCLUDE = Doxyfile-version
3 LAYOUT_FILE = @CMAKE_CURRENT_SOURCE_DIR@/DoxygenLayout.xml
4 INPUT = @CMAKE_CURRENT_SOURCE_DIR@ \
5 @CMAKE_SOURCE_DIR@/src \
6 @CMAKE_SOURCE_DIR@/share/template
7 EXAMPLE_PATH = @CMAKE_SOURCE_DIR@
9 EXCLUDE = @CMAKE_SOURCE_DIR@/src/contrib \
10 @CMAKE_SOURCE_DIR@/src/external \
11 @CMAKE_SOURCE_DIR@/src/gromacs/legacyheaders/thread_mpi/atomic \
12 @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.cpp \
13 @CMAKE_SOURCE_DIR@/src/gromacs/selection/scanner.cpp @NB_KERNEL_DIRS_TO_IGNORE_IN_DOXYGEN@
14 EXCLUDE_SYMBOLS = YY* yy* _gmx_sel_yy*
15 EXCLUDE_SYMBOLS += TEST TEST_F TEST_P TYPED_TEST_CASE TYPED_TEST INSTANTIATE_TEST_CASE_P
16 EXCLUDE_SYMBOLS += MOCK_METHOD* MOCK_CONST_METHOD*
18 STRIP_FROM_PATH = @CMAKE_SOURCE_DIR@
19 STRIP_FROM_INC_PATH = @CMAKE_SOURCE_DIR@/src
20 INCLUDE_PATH = @CMAKE_SOURCE_DIR@/src \
21 @CMAKE_SOURCE_DIR@/src/gromacs/legacyheaders
22 HAVE_DOT = @DOXYGEN_DOT_FOUND@
23 DOT_PATH = @DOXYGEN_DOT_PATH@
24 MSCGEN_PATH = @DOXYGEN_MSCGEN_PATH@
26 ENABLED_SECTIONS = @DOXYGEN_SECTIONS@
28 # Extract documentation also for code in headers within #ifdef __cplusplus
29 PREDEFINED = __cplusplus
30 # This is for thread_mpi to #ifdef some code out that should not be documented.
32 # This is for parser.cpp to make it produce code that Doxygen understands
33 # and that does not have unnecessary function declarations.
34 PREDEFINED += __STDC__ YYMALLOC=malloc YYFREE=free
36 JAVADOC_AUTOBRIEF = YES
37 BUILTIN_STL_SUPPORT = YES
38 INLINE_INHERITED_MEMB = YES
39 SORT_BY_SCOPE_NAME = YES
40 ALPHABETICAL_INDEX = YES
41 HTML_DYNAMIC_SECTIONS = YES
43 # Setting this to NO has a side effect to hide undocumented headers from the
44 # file list, which makes it generally look nicer.
47 EXTRACT_LOCAL_CLASSES = NO
49 ALIASES += Gromacs=GROMACS
51 DOT_IMAGE_FORMAT = svg
52 DOT_MULTI_TARGETS = YES
53 # According to Doxygen docs, this is required for svg support on IE
54 HTML_FILE_EXTENSION = .xhtml