4 Doxygen documentation file for directories in the source tree.
6 \author Teemu Murtola <teemu.murtola@gmail.com>
12 \brief Doxygen build system and general documentation content.
17 \brief Main source code directory.
22 \brief Source code for building the `libgromacs` library.
26 \dir src/gromacs/analysisdata
27 \brief \ref module_analysisdata
29 \ingroup module_analysisdata
32 \dir src/gromacs/analysisdata/tests
33 \brief Unit tests for \ref module_analysisdata
35 \ingroup module_analysisdata
39 \dir src/gromacs/commandline
40 \brief \ref module_commandline
42 \ingroup module_commandline
45 \dir src/gromacs/commandline/tests
46 \brief Unit tests for \ref module_commandline
48 \ingroup module_commandline
52 \dir src/gromacs/onlinehelp
53 \brief \ref module_onlinehelp
55 \ingroup module_onlinehelp
58 \dir src/gromacs/onlinehelp/tests
59 \brief Unit tests for \ref module_onlinehelp
61 \ingroup module_onlinehelp
65 \dir src/gromacs/options
66 \brief \ref module_options
68 \ingroup module_options
71 \dir src/gromacs/options/tests
72 \brief Unit tests for \ref module_options
74 \ingroup module_options
78 \dir src/gromacs/selection
79 \brief \ref module_selection
81 \ingroup module_selection
84 \dir src/gromacs/selection/tests
85 \brief Unit tests for \ref module_selection
87 \ingroup module_selection
92 \brief \ref module_simd
97 \dir src/gromacs/simd/tests
98 \brief Unit tests for \ref module_simd
104 \dir src/gromacs/trajectoryanalysis
105 \brief \ref module_trajectoryanalysis
107 \ingroup module_trajectoryanalysis
110 \dir src/gromacs/trajectoryanalysis/tests
111 \brief Unit tests for \ref module_trajectoryanalysis
113 \ingroup module_trajectoryanalysis
117 \dir src/gromacs/utility
118 \brief \ref module_utility
120 \ingroup module_utility
123 \dir src/gromacs/utility/tests
124 \brief Unit tests for \ref module_utility
126 \ingroup module_utility
132 \brief Source code for building executables, see \ref page_wrapperbinary.
136 \dir src/programs/mdrun
137 \brief Source code specific to `mdrun`.
141 \dir src/programs/view
142 \brief Source code specific to `gmx view`, including all X11-dependent code.
148 \brief \ref module_testutils
150 \ingroup module_testutils
155 \dir src/testutils/tests
156 \brief Unit tests for \ref module_testutils
158 \ingroup module_testutils
163 \brief Directory that contains installed data files.
167 \brief Template code for writing analysis programs.
171 \file share/template/template.cpp
172 \brief Template code for writing analysis programs.
174 See \ref page_analysistemplate for more information.
178 \example template.cpp
179 \brief Template code for writing analysis programs.
181 See \ref page_analysistemplate for more information.