docs/doxygen/Doxyfile-common.cmakein

   1 PROJECT_NAME           = @CMAKE_PROJECT_NAME@
   2 @INCLUDE               = Doxyfile-version
   3 LAYOUT_FILE            = @CMAKE_CURRENT_SOURCE_DIR@/DoxygenLayout.xml
   4 INPUT                  = @CMAKE_CURRENT_SOURCE_DIR@ \
   5                          @CMAKE_SOURCE_DIR@/docs/dev-manual \
   6                          @CMAKE_SOURCE_DIR@/src \
   7                          @CMAKE_SOURCE_DIR@/share/template
   8 FILE_PATTERNS          = *.c *.cpp *.h *.md
   9 # CUDA files could be included like this, but currently produce a lot of
  10 # warnings.
  11 # FILE_PATTERNS         += *.cu *.cuh
  12 EXAMPLE_PATH           = @CMAKE_SOURCE_DIR@
  13 RECURSIVE              = YES
  14 EXCLUDE                = @CMAKE_CURRENT_SOURCE_DIR@/examples \
  15                          @CMAKE_SOURCE_DIR@/src/contrib \
  16                          @CMAKE_SOURCE_DIR@/src/external \
  17                          @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.cpp \
  18                          @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.h \
  19                          @CMAKE_SOURCE_DIR@/src/gromacs/selection/scanner.cpp @NB_KERNEL_DIRS_TO_IGNORE_IN_DOXYGEN@
  20 EXCLUDE_SYMBOLS        = YY* yy* _gmx_sel_yy*
  21 EXCLUDE_SYMBOLS       += __STDC*
  22 EXCLUDE_SYMBOLS       += TEST TEST_F TEST_P TYPED_TEST_CASE TYPED_TEST INSTANTIATE_TEST_CASE_P
  23 EXCLUDE_SYMBOLS       += MOCK_METHOD* MOCK_CONST_METHOD*
  24 FULL_PATH_NAMES        = YES
  25 STRIP_FROM_PATH        = @CMAKE_SOURCE_DIR@
  26 STRIP_FROM_INC_PATH    = @CMAKE_SOURCE_DIR@/src
  27 INCLUDE_PATH           = @CMAKE_SOURCE_DIR@/src
  28 HAVE_DOT               = @DOXYGEN_DOT_FOUND@
  29 DOT_PATH               = @DOXYGEN_DOT_PATH@
  30 MSCGEN_PATH            = @DOXYGEN_MSCGEN_PATH@
  31 DOTFILE_DIRS           = @DEPGRAPH_DIR@
  32 @DOXYGEN_EXTRA_SETTINGS@
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  34 ENABLED_SECTIONS       = @DOXYGEN_SECTIONS@
  35
  36 MACRO_EXPANSION        = YES
  37 # Extract documentation also for code in headers within #ifdef __cplusplus
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  39 # This is for cases where \cond does not work, so that #ifndef can also be used.
  40 # thread_mpi also uses this, but it is now excluded from the documentation.
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  42 # This makes 'static gmx_inline' functions appear better in the documentation.
  43 PREDEFINED            += gmx_inline=inline
  44 # This is for parser.cpp to make it produce code that Doxygen understands
  45 # and that does not have unnecessary function declarations.
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  47
  48 JAVADOC_AUTOBRIEF      = YES
  49 BUILTIN_STL_SUPPORT    = YES
  50 INLINE_INHERITED_MEMB  = YES
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  52 ALPHABETICAL_INDEX     = YES
  53 HTML_DYNAMIC_SECTIONS  = YES
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  55 # Setting this to NO has a side effect to hide undocumented headers from the
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  57 VERBATIM_HEADERS       = NO
  58 STRIP_CODE_COMMENTS    = NO
  59
  60 EXTRACT_LOCAL_CLASSES  = NO
  61 # This includes 'static inline' functions from headers in the documentation.
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  63
  64 ALIASES               += Gromacs=GROMACS
  65
  66 DOT_IMAGE_FORMAT       = svg
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  68 # According to Doxygen docs, this is required for svg support on IE
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  70
  71 OUTPUT_DIRECTORY       = @HTML_OUTPUT_DIR@/doxygen