Merge remote-tracking branch 'origin/release-2019'
[alexxy/gromacs.git] / docs / doxygen / CMakeLists.txt
1 #
2 # This file is part of the GROMACS molecular simulation package.
3 #
4 # Copyright (c) 2012,2013,2014,2015,2016,2017,2018,2019, by the GROMACS development team, led by
5 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 # and including many others, as listed in the AUTHORS file in the
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8 #
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10 # modify it under the terms of the GNU Lesser General Public License
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33 # the research papers on the package. Check out http://www.gromacs.org.
34
35 include(gmxCustomCommandUtilities)
36 include(gmxOptionUtilities)
37
38 find_package(Doxygen QUIET)
39 if (DOXYGEN_FOUND)
40     # This logic closely follows that found in FindDoxygen.cmake for dot,
41     # except that the PATH variable is not cached.
42     find_program(DOXYGEN_MSCGEN_EXECUTABLE
43         NAMES mscgen
44         DOC "Message sequence chart renderer tool (http://www.mcternan.me.uk/mscgen/)")
45     if (DOXYGEN_MSCGEN_EXECUTABLE)
46         set(DOXYGEN_MSCGEN_FOUND TRUE)
47         get_filename_component(DOXYGEN_MSCGEN_PATH "${DOXYGEN_MSCGEN_EXECUTABLE}" PATH)
48     endif()
49     mark_as_advanced(DOXYGEN_MSCGEN_EXECUTABLE)
50 endif()
51
52 gmx_dependent_option(
53     GMX_COMPACT_DOXYGEN
54     "Skip parts of Doxygen documentation (in particular, many graphs) to save disk space and time"
55     OFF
56     DOXYGEN_FOUND)
57 mark_as_advanced(GMX_COMPACT_DOXYGEN)
58
59 set(USE_PYTHON_SCRIPTS OFF)
60 if (PYTHONINTERP_FOUND)
61     set(USE_PYTHON_SCRIPTS ON)
62 endif()
63
64 # Note that if you relocate this file, you also need to change gmxtree.py.
65 # TODO: Try to find a solution where this would be hard-coded here, completely
66 # separate from the logic that generates it.
67 set(INSTALLED_HEADERS_FILE ${PROJECT_BINARY_DIR}/src/gromacs/installed-headers.txt)
68
69 ########################################################################
70 # Doxygen configuration
71 #
72 if (DOXYGEN_FOUND)
73     # Generate Doxygen input configuration files
74     set(DEPGRAPH_DIR ${CMAKE_CURRENT_BINARY_DIR}/depgraphs)
75     set(DOXYGEN_SECTIONS "")
76     set(DOXYGEN_EXTRA_SETTINGS "")
77     if (GMX_COMPACT_DOXYGEN)
78         set(DOXYGEN_EXTRA_SETTINGS "@INCLUDE   = ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile-compact")
79     endif()
80     set(DOXYGENLIST "html-full;html-lib;html-user;xml")
81     foreach(_target ${DOXYGENLIST})
82         set(_targetdir ${HTML_OUTPUT_DIR}/doxygen/${_target})
83         if (NOT EXISTS ${_targetdir})
84             file(MAKE_DIRECTORY ${_targetdir})
85         endif()
86     endforeach()
87     set(DOXYGENLIST "common;dev;full;lib;user;xml")
88     foreach(_target ${DOXYGENLIST})
89         configure_file(Doxyfile-${_target}.cmakein Doxyfile-${_target})
90     endforeach()
91
92     configure_file(RunDoxygen.cmake.cmakein RunDoxygen.cmake @ONLY)
93     gmx_configure_version_file(Doxyfile-version.cmakein Doxyfile-version
94                                TARGET doxygen-version)
95
96     # Add a stamp that gets updated whenever a source file that contributes to
97     # Doxygen is updated.  All Doxygen targets can then depend on this stamp,
98     # instead of each specifying this massive set of dependencies.
99     # TODO: The set of files that affects Doxygen is not exactly the same as
100     # that which affects the dependency graphs, and neither is captured
101     # perfectly with this set, but this can be improved if it becomes a real
102     # issue (the differences are mainly in the generated group kernel files,
103     # but there are some minor other differences as well).
104     if (SOURCE_IS_GIT_REPOSITORY AND GIT_FOUND)
105         gmx_get_files_with_gitattribute(doxygen_sources gmx-doxygen)
106         # Add also common configuration files that influence the generation.
107         set(doxygen_deps
108             ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile-common
109             ${CMAKE_CURRENT_BINARY_DIR}/RunDoxygen.cmake)
110         if (GMX_COMPACT_DOXYGEN)
111             list(APPEND doxygen_deps ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile-compact)
112         endif()
113         gmx_add_custom_output_target(doxygen-source-timestamp
114             OUTPUT STAMP
115             DEPENDS_FILE_LIST doxygen_sources
116             DEPENDS ${doxygen_deps}
117             COMMENT "Updating Doxygen source timestamp")
118     else()
119         # If there is no git, we just update the stamp every time, and the
120         # builds are triggered every time.  This should be rare enough, but
121         # this case still needs to be supported for the Jenkins job that builds
122         # the documentation for a release from the release tarball.
123         gmx_add_custom_output_target(doxygen-source-timestamp
124             RUN_ALWAYS OUTPUT STAMP
125             COMMENT "Updating Doxygen source timestamp")
126     endif()
127
128     # Helper function to create a Doxygen build target
129     function (add_doxygen_target TARGET TYPE COMMENT)
130         set(_deps doxygen-source-timestamp doxygen-version
131             ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile-${TYPE})
132         set(_fast_arg "")
133         list (FIND ARGN "DEPGRAPHS" _index)
134         if (${_index} GREATER -1)
135             set(_fast_arg "ADD_FAST_TARGET")
136             if (TARGET dep-graphs-dot)
137                 list(APPEND _deps dep-graphs-dot)
138             endif()
139         endif()
140         list (FIND ARGN "DEPXML" _index)
141         if (${_index} GREATER -1)
142             list(APPEND _deps doxygen-xml)
143         endif()
144         gmx_add_custom_output_target(${TARGET} OUTPUT STAMP ${_fast_arg}
145             # Ensure the directory exists to avoid spurious warnings
146             COMMAND ${CMAKE_COMMAND} -E make_directory ${DEPGRAPH_DIR}
147             COMMAND ${CMAKE_COMMAND} -DDOCTYPE=${TYPE} -P RunDoxygen.cmake
148             DEPENDS ${_deps}
149             WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
150             COMMENT "${COMMENT}" USES_TERMINAL)
151         if (_fast_arg)
152             add_dependencies(${TARGET}-fast doxygen-version)
153         endif()
154     endfunction()
155
156     # The XML target is necessary for the dependency graphs
157     add_doxygen_target(doxygen-xml xml "Extracting Doxygen documentation to XML")
158
159     # Add targets for generating the dependency graphs; they are necessary for
160     # the full and lib variants of the documentation.
161     if (USE_PYTHON_SCRIPTS)
162         # Add target that generates .dot files for the dependency graphs.
163         # The output also depends on the Doxygen source files, but the
164         # dependency on doxygen-xml takes care of that transitively.
165         gmx_add_custom_output_target(dep-graphs-dot ADD_FAST_TARGET
166             OUTPUT STAMP
167             COMMAND ${PYTHON_EXECUTABLE}
168                 ${CMAKE_CURRENT_SOURCE_DIR}/graphbuilder.py
169                 -S ${CMAKE_SOURCE_DIR} -B ${CMAKE_BINARY_DIR}
170                 --ignore-cycles ${CMAKE_CURRENT_SOURCE_DIR}/cycle-suppressions.txt
171                 -o ${DEPGRAPH_DIR}
172             DEPENDS doxygen-xml ${INSTALLED_HEADER_FILE}
173                 ${CMAKE_CURRENT_SOURCE_DIR}/doxygenxml.py
174                 ${CMAKE_CURRENT_SOURCE_DIR}/gmxtree.py
175                 ${CMAKE_CURRENT_SOURCE_DIR}/graphbuilder.py
176                 ${CMAKE_CURRENT_SOURCE_DIR}/cycle-suppressions.txt
177             COMMENT "Generating include dependency graphs for dot"
178             USES_TERMINAL)
179
180         # Add separate targets for converting the .dot files to .png.
181         # These are not needed by the Doxygen targets, but are useful for
182         # investigating just the graphs.
183         set(dep_graphs_command_dot
184             ${CMAKE_COMMAND} -DGRAPHDIR=${DEPGRAPH_DIR}
185             -DDOT_EXECUTABLE=${DOXYGEN_DOT_EXECUTABLE}
186             -P ${CMAKE_CURRENT_SOURCE_DIR}/generateGraphs.cmake)
187         add_custom_target(dep-graphs      COMMAND ${dep_graphs_command_dot}
188             COMMENT "Generating PNG include dependency graphs" VERBATIM)
189         add_custom_target(dep-graphs-fast COMMAND ${dep_graphs_command_dot}
190             COMMENT "Generating PNG include dependency graphs" VERBATIM)
191         add_dependencies(dep-graphs      dep-graphs-dot)
192         add_dependencies(dep-graphs-fast dep-graphs-dot-fast)
193     endif()
194
195     # Create the actual targets to build the documentation.
196     add_doxygen_target(doxygen-full full "Generating full documentation with Doxygen" DEPGRAPHS DEPXML)
197     add_doxygen_target(doxygen-lib  lib  "Generating library documentation with Doxygen" DEPGRAPHS DEPXML)
198     add_doxygen_target(doxygen-user user "Generating public API documentation with Doxygen" DEPXML)
199     add_doxygen_target(doxygen-dev dev "Generating verbose developer docs with Doxygen" DEPGRAPHS DEPXML)
200     # Convenience targets to build all the documentation flavors.
201     add_custom_target(doxygen-all)
202     add_custom_target(doxygen-all-fast)
203     add_dependencies(doxygen-all      doxygen-full doxygen-lib doxygen-user)
204     add_dependencies(doxygen-all-fast doxygen-full-fast doxygen-lib-fast doxygen-user)
205
206     # Finally, create the check-source target.
207     if (USE_PYTHON_SCRIPTS)
208         # TODO: Consider whether this is the best location for this code,
209         # since not all of it is Doxygen-specific (but nearly all of it
210         # relies on the Doxygen XML documentation).
211         # The output .log file currently needs to be here, since Jenkins
212         # expects that.
213         set(check_source_command
214             ${PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/check-source.py
215             -S ${CMAKE_SOURCE_DIR} -B ${CMAKE_BINARY_DIR}
216             -l ${CMAKE_CURRENT_BINARY_DIR}/check-source.log
217             --ignore ${CMAKE_CURRENT_SOURCE_DIR}/suppressions.txt
218             --ignore-cycles ${CMAKE_CURRENT_SOURCE_DIR}/cycle-suppressions.txt)
219         add_custom_target(check-source      COMMAND ${check_source_command}
220             COMMENT "Checking source code for various issues" VERBATIM USES_TERMINAL)
221         add_custom_target(check-source-fast COMMAND ${check_source_command}
222             COMMENT "Checking source code for various issues" VERBATIM USES_TERMINAL)
223         add_dependencies(check-source       doxygen-xml)
224     endif()
225 else()
226     function (add_disabled_doxygen_target TARGET)
227         add_custom_target(${TARGET}
228             COMMAND ${CMAKE_COMMAND} -E echo
229                 "Cannot build/run target ${TARGET} because Doxygen is not available"
230             COMMENT "Doxygen not available" VERBATIM)
231     endfunction()
232     add_disabled_doxygen_target(doxygen-all)
233     add_disabled_doxygen_target(doxygen-all-fast)
234     add_disabled_doxygen_target(doxygen-xml)
235     add_disabled_doxygen_target(doxygen-user)
236     add_disabled_doxygen_target(doxygen-lib)
237     add_disabled_doxygen_target(doxygen-lib-fast)
238     add_disabled_doxygen_target(doxygen-full)
239     add_disabled_doxygen_target(doxygen-full-fast)
240     add_disabled_doxygen_target(check-source)
241     add_disabled_doxygen_target(check-source-fast)
242     add_disabled_doxygen_target(dep-graphs)
243     add_disabled_doxygen_target(dep-graphs-fast)
244 endif()