admin/gitlab-ci/gromacs.matrix/gromacs.gcc-10-coverage.gitlab-ci.yml

   1 # Test goal: code coverage with newest GCC
   2 # Test intents (should change rarely and conservatively):
   3 #   OS: Ubuntu newest supported
   4 #   Compiler: GCC newest supported
   5 #   GPU: no
   6 #   Scope: configure, build, unit tests, coverage
   7 # Test implementation choices (free to change as needed):
   8 #   OS: Ubuntu 20.04
   9 #   Build type: Debug
  10 #   Compiler: GCC 10
  11 #   MPI: thread_MPI
  12 #   SIMD: AVX2_256
  13 #   Parallelism nt/ntomp: 4/2 (unit tests)
  14
  15 gromacs:gcc-10:coverage:configure:
  16   extends:
  17     - .gromacs:base:configure
  18     - .use-gcc:base
  19     - .rules:post-merge-acceptance
  20   image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-gcc-10
  21   variables:
  22     CMAKE: /usr/local/cmake-3.18.4/bin/cmake
  23     CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=AVX2_256"
  24     CMAKE_EXTRA_OPTIONS: "-DGMX_BUILD_FOR_COVERAGE=ON"
  25     COMPILER_MAJOR_VERSION: 10
  26
  27 gromacs:gcc-10:coverage:build:
  28   extends:
  29     - .variables:default
  30     - .gromacs:base:build
  31     - .before_script:default
  32     - .use-ccache
  33     - .rules:post-merge-acceptance
  34   image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-gcc-10
  35   variables:
  36     CMAKE: /usr/local/cmake-3.18.4/bin/cmake
  37   needs:
  38     - job: gromacs:gcc-10:coverage:configure
  39
  40 gromacs:gcc-10:coverage:test:
  41   extends:
  42     - .gromacs:base:test
  43     - .rules:post-merge-acceptance
  44   image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-gcc-10
  45   variables:
  46     CMAKE: /usr/local/cmake-3.18.4/bin/cmake
  47   tags:
  48     - k8s-scilifelab
  49   needs:
  50     - job: gromacs:gcc-10:coverage:build
  51   artifacts:
  52     paths:
  53       - $BUILD_DIR
  54
  55 gromacs:coverage:analyse:
  56   variables:
  57     CMAKE: /usr/local/cmake-3.18.4/bin/cmake
  58     VENVPATH: "/root/venv/py3.7"
  59     GCOVR_GENERAL_OPTIONS: "-r ../ /. --gcov-executable=gcov-10 --exclude-unreachable-branches --exclude-throw-branches -j$KUBERNETES_CPU_LIMIT"
  60     GCOVR_EXCLUDE_OPTIONS: "--exclude-directories '^src/external/.*' --exclude-directories '^src/gromacs/selection/.*' --exclude-directories '.*tests.*"
  61   extends:
  62     - .variables:default
  63     - .rules:post-merge-acceptance
  64   stage: post-test
  65   image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-gcc-10
  66   needs:
  67     - job: gromacs:gcc-10:coverage:build
  68     - job: gromacs:gcc-10:coverage:test
  69
  70   tags:
  71     - k8s-scilifelab
  72   script:
  73     - echo ${GCOVR_GENERAL_OPTIONS}
  74     - echo ${GCOVR_EXCLUDE_OPTIONS}
  75     - source $VENVPATH/bin/activate
  76     - mkdir public
  77     - outputdir=`pwd`/public
  78     - cd $BUILD_DIR
  79     # run gcovr to write to stdout for GitLab pipeline grep.
  80     - gcovr ${GCOVR_GENERAL_OPTIONS} ${GCOVR_EXCLUDE_OPTIONS}
  81     # run gcovr to generate xml output. keep the generated files to produce the html output later.
  82     # the invocations need to be separate due to a crash in gcovr where files can not be found.
  83     - gcovr ${GCOVR_GENERAL_OPTIONS} ${GCOVR_EXCLUDE_OPTIONS} --xml $outputdir/cobertura-coverage.xml --xml-pretty --keep
  84     # final gcovr run, using the generated files to produce nice looking html output
  85     - gcovr ${GCOVR_GENERAL_OPTIONS} ${GCOVR_EXCLUDE_OPTIONS} --html $outputdir/coverage.html --use-gcov-files
  86   artifacts:
  87     paths:
  88       - public/
  89     reports:
  90       cobertura: public/cobertura-coverage.xml