admin/gitlab-ci/documentation.gitlab-ci.yml

   1 # Build documentation and web page.
   2
   3 .docs:configure:
   4   extends:
   5     - .variables:default
   6     - .gromacs:base:configure
   7     - .before_script:default
   8   # TODO (#3480) this should be organized more like the current documentation.py script
   9   image: gromacs/ci-docs-llvm-master
  10   stage: configure-build
  11   cache: {}
  12   variables:
  13     KUBERNETES_CPU_LIMIT: 1
  14     KUBERNETES_CPU_REQUEST: 1
  15     KUBERNETES_MEMORY_REQUEST: 2Gi
  16     CMAKE_COMPILER_SCRIPT: "-DCMAKE_C_COMPILER=clang-7 -DCMAKE_CXX_COMPILER=clang++-7"
  17     CMAKE_EXTRA_OPTIONS: ""
  18     CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=None"
  19     CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=OFF"
  20     CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
  21     CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
  22     CMAKE_GPU_OPTIONS: "-DGMX_GPU=None"
  23     CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=ON"
  24   script:
  25     - if [[ ! -z $GROMACS_RELEASE && $GROMACS_RELEASE == "true" ]] ; then
  26       REL_OPTION="-DGMX_BUILD_TARBALL=ON" ;
  27       else
  28       REL_OPTION="-DGMX_BUILD_TARBALL=OFF" ;
  29       fi
  30     - echo $CMAKE_COMPILER_SCRIPT
  31     - echo $CMAKE_EXTRA_OPTIONS
  32     - echo $CMAKE_SIMD_OPTIONS
  33     - echo $CMAKE_GPU_OPTIONS
  34     - echo $CMAKE_MPI_OPTIONS
  35     - echo $CMAKE_PRECISION_OPTIONS
  36     - echo $CMAKE_BUILD_TYPE_OPTIONS
  37     - echo $CMAKE_GMXAPI_OPTIONS
  38     - echo $REL_OPTION
  39     - if [[ -d $BUILD_DIR ]] ; then
  40       rm -rf $BUILD_DIR && mkdir $BUILD_DIR ;
  41       else
  42       echo "Preparing new build directory" ;
  43       mkdir $BUILD_DIR ;
  44       fi
  45     - cd $BUILD_DIR
  46     - cmake ..
  47       -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
  48       $CMAKE_COMPILER_SCRIPT
  49       $CMAKE_EXTRA_OPTIONS
  50       $CMAKE_SIMD_OPTIONS
  51       $CMAKE_MPI_OPTIONS
  52       $CMAKE_PRECISION_OPTIONS
  53       $CMAKE_BUILD_TYPE_OPTIONS
  54       $CMAKE_GPU_OPTIONS
  55       $CMAKE_GMXAPI_OPTIONS
  56       $REL_OPTION
  57       -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
  58       2>&1 | tee cmakeLog.log
  59     - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
  60     - if [ -s cmakeErrors.log  ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
  61     - cd ..
  62   artifacts:
  63     name: docs-artifacts-$CI_COMMIT_REF_SLUG
  64     when: always
  65     expire_in: 1 week
  66     paths:
  67       - $BUILD_DIR
  68
  69 .docs:configure:release:
  70   extends:
  71     - .variables:default
  72     - .gromacs:base:configure
  73     - .before_script:default
  74     - .rules:nightly-only-for-release
  75   # TODO (#3480) this should be organized more like the current documentation.py script
  76   image: gromacs/ci-docs-llvm-master
  77   stage: release-configure
  78   cache: {}
  79   variables:
  80     KUBERNETES_CPU_LIMIT: 1
  81     KUBERNETES_CPU_REQUEST: 1
  82     KUBERNETES_MEMORY_REQUEST: 2Gi
  83     CMAKE_COMPILER_SCRIPT: "-DCMAKE_C_COMPILER=clang-7 -DCMAKE_CXX_COMPILER=clang++-7"
  84     CMAKE_EXTRA_OPTIONS: ""
  85     CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=None"
  86     CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
  87     CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
  88     CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
  89     CMAKE_GPU_OPTIONS: "-DGMX_GPU=None"
  90     CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=ON"
  91     RELEASE_BUILD_DIR: release-doc-builds
  92     RELEASE_SOURCE: release-source-from-tarball
  93     RELEASE_REGRESSIONTESTS: release-regressiontests-from-tarball
  94   script:
  95     - if [[ $GROMACS_RELEASE == "true" ]] ; then
  96       REL_OPTION="-DGMX_BUILD_TARBALL=ON" ;
  97       else
  98       REL_OPTION="-DGMX_BUILD_TARBALL=OFF" ;
  99       fi
 100     - echo $CMAKE_COMPILER_SCRIPT
 101     - echo $CMAKE_EXTRA_OPTIONS
 102     - echo $CMAKE_SIMD_OPTIONS
 103     - echo $CMAKE_GPU_OPTIONS
 104     - echo $CMAKE_MPI_OPTIONS
 105     - echo $CMAKE_PRECISION_OPTIONS
 106     - echo $CMAKE_BUILD_TYPE_OPTIONS
 107     - echo $CMAKE_GMXAPI_OPTIONS
 108     - echo $REL_OPTION
 109     - VERSION=`cat version.json |
 110       python3 -c "import json,sys; print(json.load(sys.stdin)['version'])"`
 111     - if [[ $GROMACS_RELEASE != "true" ]] ; then
 112       VERSION=$VERSION-dev ;
 113       fi
 114     - REGTEST_COMPARE=`cat version.json |
 115       python3 -c "import json,sys; print(json.load(sys.stdin)['regressiontest-md5sum'])"`
 116     - SOURCENAME=gromacs-$VERSION
 117     - SOURCETARBALL=$SOURCENAME.tar.gz
 118     - REGTESTNAME=regressiontests-$VERSION
 119     - REGTESTTARBALL=$REGTESTNAME.tar.gz
 120     - SOURCE_MD5SUM=`md5sum $SOURCETARBALL | awk '{print $1}'`
 121     - RELEASE_TARBALLS=release-tarballs
 122     - rm -rf $RELEASE_TARBALLS $RELEASE_SOURCE $RELEASE_REGRESSIONTESTS && mkdir $RELEASE_TARBALLS
 123     - mv $SOURCETARBALL $RELEASE_TARBALLS
 124     - mv $REGTESTTARBALL $RELEASE_TARBALLS
 125     - cd $RELEASE_TARBALLS
 126     # We rename the source and regressiontest directories
 127     # to have names for them that don't change for different versions.
 128     - tar -xf $SOURCETARBALL
 129     - mv $SOURCENAME ../$RELEASE_SOURCE
 130     - tar -xf $REGTESTTARBALL
 131     - mv $REGTESTNAME ../$RELEASE_REGRESSIONTESTS
 132     - rm $SOURCETARBALL $REGTESTTARBALL
 133     - cd ..
 134     - echo $CMAKE_COMPILER_SCRIPT
 135     - echo $CMAKE_EXTRA_OPTIONS
 136     - echo $CMAKE_SIMD_OPTIONS
 137     - echo $CMAKE_GPU_OPTIONS
 138     - echo $CMAKE_MPI_OPTIONS
 139     - echo $CMAKE_PRECISION_OPTIONS
 140     - echo $CMAKE_BUILD_TYPE_OPTIONS
 141     - echo $CMAKE_GMXAPI_OPTIONS
 142     - if [[ -d $RELEASE_BUILD_DIR ]] ; then
 143       echo "Cleaning up build directory" ;
 144       rm -rf $RELEASE_BUILD_DIR && mkdir $RELEASE_BUILD_DIR ;
 145       else
 146       echo "Preparing new build directory" ;
 147       mkdir $RELEASE_BUILD_DIR ;
 148       fi
 149     - cd $RELEASE_BUILD_DIR
 150     - cmake ../$RELEASE_SOURCE/
 151       -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
 152       $CMAKE_COMPILER_SCRIPT
 153       $CMAKE_EXTRA_OPTIONS
 154       $CMAKE_SIMD_OPTIONS
 155       $CMAKE_MPI_OPTIONS
 156       $CMAKE_PRECISION_OPTIONS
 157       $CMAKE_BUILD_TYPE_OPTIONS
 158       $CMAKE_GPU_OPTIONS
 159       $CMAKE_GMXAPI_OPTIONS
 160       $REL_OPTION
 161       "-DSOURCE_MD5SUM=$SOURCE_MD5SUM"
 162       "-DREGRESSIONTEST_PATH=../$RELEASE_REGRESSIONTESTS"
 163       -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
 164       2>&1 | tee cmakeLog.log
 165     - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
 166     - if [ -s cmakeErrors.log  ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
 167     - cd ..
 168   artifacts:
 169     name: docs-artifacts-$CI_COMMIT_REF_SLUG
 170     when: always
 171     expire_in: 1 week
 172     paths:
 173       - $RELEASE_BUILD_DIR
 174       - $RELEASE_REGRESSIONTESTS
 175       - $RELEASE_SOURCE
 176
 177 docs:configure:
 178   extends:
 179     - .docs:configure
 180     - .rules:basic-push
 181   variables:
 182     BUILD_DIR: build-docs
 183     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 184
 185 .docs:build:
 186   # TODO (#3480) this should be organized more like the current documentation.py script
 187   image: gromacs/ci-docs-llvm-master
 188   script:
 189     - cd $BUILD_DIR
 190     - cmake --build . --target gmx -- -j8
 191     - cd ..
 192   artifacts:
 193     name: docs-artifacts-$CI_COMMIT_REF_SLUG
 194     when: always
 195     expire_in: 1 week
 196     paths:
 197       - $BUILD_DIR
 198
 199 docs:build:
 200   extends:
 201     - .variables:default
 202     - .gromacs:base:build
 203     - .use-ccache
 204     - .docs:build
 205     - .before_script:default
 206     - .rules:basic-push
 207   stage: documentation
 208   needs:
 209     - job: docs:configure
 210   variables:
 211     BUILD_DIR: build-docs
 212
 213 # The manual build is built separately so that errors in converting
 214 # Sphinx to LaTeX and compiling can always be found in the
 215 # all-output.txt file, while avoiding many thousands of lines of spam
 216 # from pdflatex for normal builds. This does reduce the available
 217 # parallel utilization, and so increases the build time.
 218 #
 219 # TODO why are the doxygen and sphinx log files disappearing
 220 # TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
 221 .webpage:build:
 222   extends:
 223     - .variables:default
 224     - .gromacs:base:build
 225     - .before_script:default
 226   # TODO (#3480) this should be organized more like the current documentation.py script
 227   image: gromacs/ci-docs-llvm-master
 228   cache: {}
 229   variables:
 230     KUBERNETES_CPU_LIMIT: 4
 231     KUBERNETES_CPU_REQUEST: 2
 232     KUBERNETES_MEMORY_REQUEST: 4Gi
 233   script:
 234     - cd $BUILD_DIR
 235     - cmake --build . --target manual -- -j4 | tee docs/manual/all-output.log
 236       | grep -i "warning" | grep -v "TeX" | grep -v "Package" || true
 237     - cmake --build . --target webpage -- -j4
 238     - grep "WARNING:" docs/manual/all-output.log | tee pythonErrors.log || true
 239     - grep -i "error" docs/sphinx-*.log | tee sphinxDiagnostics.log || true
 240     - grep -i "warning" docs/sphinx-*.log | tee -a sphinxDiagnostics.log || true
 241     - if [ -s pythonErrors.log ] ; then echo "Found Python Errors during build"; exit 1; fi
 242     - if [ -s sphinxErrors.log ] ; then echo "Found errors during Sphinx documentation build"; cat sphinxErrors.log; exit 1; fi
 243     - if [ -s sphinxDiagnostics.log ] ; then echo "Found diagnostic warnings during Sphinx documentation build"; cat sphinxDiagnostics.log; exit 1; fi
 244     - cd ..
 245   artifacts:
 246     name: docs-artifacts-$CI_COMMIT_REF_SLUG
 247     when: always
 248     expire_in: 1 week
 249     paths:
 250       - $BUILD_DIR/*.log
 251       - $BUILD_DIR/docs/html
 252       - $BUILD_DIR/docs/manual/gromacs.log
 253       - $BUILD_DIR/docs/manual/all-output.log
 254       - $BUILD_DIR/docs/doxygen/doxygen-user.log
 255       - $BUILD_DIR/docs/doxygen/doxygen-lib.log
 256       - $BUILD_DIR/docs/doxygen/doxygen-full.log
 257       - $BUILD_DIR/docs/sphinx-html.log
 258
 259 webpage:build:
 260   extends:
 261     - .webpage:build
 262     - .rules:basic-push
 263   stage: post-test
 264   needs:
 265     - job: docs:build
 266     - job: check-source
 267       artifacts: false
 268   variables:
 269     BUILD_DIR: build-docs
 270
 271 webpage:configure:
 272   extends:
 273     - .docs:configure:release
 274     - .rules:nightly-only-for-release
 275   cache: {}
 276   tags:
 277     - k8s-scilifelab
 278   dependencies:
 279     - archive:package
 280     - regressiontests:package
 281     - prepare-release-version
 282   variables:
 283     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 284
 285
 286 webpage:dependencies:
 287   extends:
 288     - .gromacs:base:build
 289     - .variables:default
 290     - .use-ccache
 291     - .docs:build
 292     - .before_script:default
 293     - .rules:nightly-only-for-release
 294   stage: release-build
 295   tags:
 296     - k8s-scilifelab
 297   needs:
 298     - job: webpage:configure
 299   variables:
 300     BUILD_DIR: release-doc-builds
 301
 302 webpage:build:release:
 303   extends:
 304     - .webpage:build
 305     - .rules:nightly-only-for-release
 306   stage: release-prepare-deploy
 307   tags:
 308     - k8s-scilifelab
 309   dependencies:
 310     - webpage:dependencies
 311     - webpage:configure
 312   variables:
 313     BUILD_DIR: release-doc-builds