2 # This file is part of the GROMACS molecular simulation package.
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7 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
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35 # the research papers on the package. Check out http://www.gromacs.org.
37 cmake_minimum_required(VERSION 3.16.3)
38 cmake_policy(SET CMP0074 NEW) # From CMake 3.12
39 cmake_policy(SET CMP0068 NEW) # From CMake-3.9
41 # CMake modules/macros are in a subdirectory to keep this file cleaner
42 # This needs to be set before project() in order to pick up toolchain files
43 list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake ${CMAKE_CURRENT_SOURCE_DIR}/cmake/Platform)
45 if(CMAKE_SYSTEM_NAME STREQUAL "Darwin")
46 # Providing a default value >=10.14 helps to find modern C++ compatibility,
47 # such as by defaulting to the Clang libc++ instead of libstdc++.
48 set(CMAKE_OSX_DEPLOYMENT_TARGET 10.14 CACHE STRING
49 "OS X deployment target affects default SDK version and compiler flags.")
50 # By default, limit the binary architecture to a single 64-bit build.
51 set(CMAKE_OSX_ARCHITECTURES x86_64 CACHE STRING
52 "OS X architecture affects the compatibility of the (potentially fat) binaries produced."
58 set(CMAKE_CXX_STANDARD 17)
59 set(CMAKE_CXX_STANDARD_REQUIRED ON)
60 set(CMAKE_CXX_EXTENSIONS OFF)
62 include(gmxManageCcache)
64 set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
65 set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
66 set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
68 find_package(LibStdCpp)
70 # Python is first referenced in gmxVersionInfo, so we perform the search early
71 # to find a suitable installation for all components.
72 include(gmxPythonDiscovery)
73 # Set up common version variables, as well as general information about
74 # the build tree (whether the build is from a source package or from a git
75 # repository). Also declares a few functions that will be used for generating
76 # version info files later.
77 include(gmxBuildTreeInfo)
78 include(gmxVersionInfo)
80 if(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT AND UNIX)
81 set(CMAKE_INSTALL_PREFIX "/usr/local/gromacs" CACHE STRING "Installation prefix (installation will need write permissions here)" FORCE)
83 if("${CMAKE_INSTALL_PREFIX}" STREQUAL "${CMAKE_BINARY_DIR}")
84 message(FATAL_ERROR "GROMACS cannot be installed into the build tree, choose a different location for CMAKE_INSTALL_PREFIX")
87 include(gmxBuildTypeReference)
88 include(gmxBuildTypeProfile)
89 include(gmxBuildTypeTSAN)
90 include(gmxBuildTypeASAN)
91 include(gmxBuildTypeMSAN)
92 include(gmxBuildTypeUBSAN)
93 include(gmxBuildTypeReleaseWithAssert)
95 if(NOT CMAKE_BUILD_TYPE)
96 set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Choose the type of build, options are: Debug Release RelWithDebInfo MinSizeRel Reference RelWithAssert Profile TSAN ASAN MSAN UBSAN." FORCE)
97 # Set the possible values of build type for cmake-gui
98 set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release"
99 "MinSizeRel" "RelWithDebInfo" "Reference" "RelWithAssert" "Profile" "TSAN" "ASAN" "MSAN" "UBSAN")
101 if(CMAKE_CONFIGURATION_TYPES)
102 # Add appropriate GROMACS-specific build types for the Visual
103 # Studio generator (Debug, Release, MinSizeRel and RelWithDebInfo
104 # are already present by default).
105 list(APPEND CMAKE_CONFIGURATION_TYPES "RelWithAssert" "Reference")
106 list(REMOVE_DUPLICATES CMAKE_CONFIGURATION_TYPES)
107 set(CMAKE_CONFIGURATION_TYPES "${CMAKE_CONFIGURATION_TYPES}" CACHE STRING
108 "List of configuration types"
111 set(build_types_with_explicit_flags RELEASE DEBUG RELWITHDEBINFO RELWITHASSERT MINSIZEREL PROFILE)
113 set_property(GLOBAL PROPERTY FIND_LIBRARY_USE_LIB64_PATHS ON)
115 include(gmxCTestUtilities)
118 include(gmxCPackUtilities)
121 # Variables that accumulate stuff influencing the installed headers
122 set(INSTALLED_HEADER_INCLUDE_DIRS "")
123 set(INSTALLED_HEADER_DEFINITIONS "")
125 ########################################################################
126 # Global non-cache variables for implementing the build system
127 ########################################################################
129 # These variables collect libraries that GROMACS requires for
130 # linking. They should be appended to with list(APPEND ${name}
131 # new-library) calls. They are:
132 # - Libraries that are required for libgromacs (only)
133 set(GMX_EXTRA_LIBRARIES "")
134 # - Libraries that are required for all code in the repository
135 set(GMX_COMMON_LIBRARIES "")
136 # - Libraries that all code linked against libgromacs needs
137 # (i.e., something that is exposed in installed headers).
138 set(GMX_PUBLIC_LIBRARIES "")
140 ########################################################################
141 # Check and warn if cache generated on a different host is being reused
142 ########################################################################
144 execute_process(COMMAND hostname
145 OUTPUT_VARIABLE TMP_HOSTNAME
146 OUTPUT_STRIP_TRAILING_WHITESPACE)
147 # Only check for host name if not running in a CI environment, as the cache might
148 # be reused there between different machines in different stages
149 if(GMX_BUILD_HOSTNAME AND NOT "${GMX_BUILD_HOSTNAME}" STREQUAL "${TMP_HOSTNAME}"
150 AND NOT DEFINED ENV{CI_JOB_ID})
152 The CMake cache, probably generated on a different host (${GMX_BUILD_HOSTNAME}),
153 is being reused! This could lead to inconsistencies; therefore, it is
154 recommended to regenerate the cache!")
156 set(GMX_BUILD_HOSTNAME "${TMP_HOSTNAME}" CACHE INTERNAL
157 "Hostname of the machine where the cache was generated.")
160 ########################################################################
161 # Detect architecture before setting options so we can alter defaults
162 ########################################################################
163 # Detect the architecture the compiler is targetting, detect
164 # SIMD instructions possibilities on that hardware, suggest SIMD instruction set
165 # to use if none is specified, and populate the cache option for CPU
167 include(gmxDetectTargetArchitecture)
168 gmx_detect_target_architecture()
170 ########################################################################
171 # User input options #
172 ########################################################################
173 include(gmxOptionUtilities)
175 set(CMAKE_PREFIX_PATH "" CACHE STRING "Extra locations to search for external libraries and tools (give directory without lib, bin, or include)")
177 option(GMX_DOUBLE "Use double precision (much slower, use only if you really need it)" OFF)
179 option(GMX_MPI "Build a parallel (message-passing) version of GROMACS" OFF)
180 option(GMX_THREAD_MPI "Build a thread-MPI-based multithreaded version of GROMACS (not compatible with MPI)" ON)
182 option(GMX_MIMIC "Enable MiMiC QM/MM interface (CPMD is required)" OFF)
184 option(GMX_FAHCORE "Build a library with mdrun functionality" OFF)
185 mark_as_advanced(GMX_FAHCORE)
187 option(GMX_COOL_QUOTES "Enable GROMACS cool quotes" ON)
188 mark_as_advanced(GMX_COOL_QUOTES)
189 gmx_add_cache_dependency(GMX_COOL_QUOTES BOOL "NOT GMX_FAHCORE" OFF)
191 option(GMX_INSTALL_LEGACY_API "Install legacy headers" OFF)
193 gmx_option_multichoice(
195 "Framework for GPU acceleration"
197 OFF CUDA OpenCL SYCL)
199 gmx_option_multichoice(
201 "SIMD instruction set for CPU kernels and compiler optimization"
203 AUTO None SSE2 SSE4.1 AVX_128_FMA AVX_256 AVX2_256 AVX2_128 AVX_512 AVX_512_KNL ARM_NEON_ASIMD ARM_SVE IBM_VSX Reference)
205 set(GMX_FFT_LIBRARY_DEFAULT "fftw3")
207 gmx_option_multichoice(
210 "${GMX_FFT_LIBRARY_DEFAULT}"
211 fftw3 mkl "fftpack[built-in]")
212 gmx_dependent_option(
214 "Download and build FFTW 3 during the GROMACS build process, rather than fall back on the really slow fftpack."
216 "GMX_FFT_LIBRARY STREQUAL FFTW3")
217 gmx_dependent_option(
218 GMX_DISABLE_FFTW_MEASURE
219 "Do not optimize FFTW setups (not needed with SSE)"
221 "GMX_FFT_LIBRARY STREQUAL FFTW3")
222 mark_as_advanced(GMX_BUILD_OWN_FFTW)
223 mark_as_advanced(GMX_DISABLE_FFTW_MEASURE)
225 gmx_dependent_cache_variable(GMX_SIMD_REF_FLOAT_WIDTH "Reference SIMD single precision width" STRING "4" "GMX_SIMD STREQUAL REFERENCE")
226 gmx_dependent_cache_variable(GMX_SIMD_REF_DOUBLE_WIDTH "Reference SIMD double precision width" STRING "2" "GMX_SIMD STREQUAL REFERENCE")
228 # This should be moved to a separate NBNXN cmake module when that code is cleaned up and modularized
230 option(GMX_BROKEN_CALLOC "Work around broken calloc()" OFF)
231 mark_as_advanced(GMX_BROKEN_CALLOC)
233 option(GMX_OPENMP "Enable OpenMP-based multithreading" ON)
235 option(GMX_USE_TNG "Use the TNG library for trajectory I/O" ON)
237 option(GMX_CYCLE_SUBCOUNTERS "Enable cycle subcounters to get a more detailed cycle timings" OFF)
238 mark_as_advanced(GMX_CYCLE_SUBCOUNTERS)
240 option(GMX_SKIP_DEFAULT_CFLAGS "Don't automatically add suggested/required Compiler flags." OFF)
241 mark_as_advanced(GMX_SKIP_DEFAULT_CFLAGS)
243 option(GMX_BUILD_FOR_COVERAGE
244 "Tune build for better code coverage metrics (e.g., disable asserts)"
246 mark_as_advanced(GMX_BUILD_FOR_COVERAGE)
248 option(GMX_DEVELOPER_BUILD
249 "Enable Developer convenience features: always build unit-tests"
251 mark_as_advanced(GMX_DEVELOPER_BUILD)
253 gmx_set_boolean(GMX_COMPILER_WARNINGS_DEFAULT "NOT SOURCE_IS_SOURCE_DISTRIBUTION")
254 option(GMX_COMPILER_WARNINGS
255 "Enable a default set of compiler warnings"
256 ${GMX_COMPILER_WARNINGS_DEFAULT})
257 mark_as_advanced(GMX_COMPILER_WARNINGS)
258 # Always turn on compiler warnings with a developer build.
259 gmx_add_cache_dependency(GMX_COMPILER_WARNINGS BOOL "NOT GMX_DEVELOPER_BUILD" ON)
261 option(GMX_BUILD_SHARED_EXE
262 "Build exectuables as shared binaries. If not set, this disables rpath and dynamic linker flags in an attempt to build a static binary, but this may require setting up the toolchain properly and making appropriate libraries available."
264 mark_as_advanced(GMX_BUILD_SHARED_EXE)
266 option(GMX_PHYSICAL_VALIDATION
267 "Include physical validation tests in ctest environment. These can then be called using 'make check-phys' or
268 'make check-all'. Warning: Running the physical validation tests takes significantly more time than other tests!"
270 mark_as_advanced(GMX_PHYSICAL_VALIDATION)
272 ######################################################################
273 # Detect OpenMP support
274 ######################################################################
275 # The OpenMP detection _must_ come before tests for other CFLAGS.
276 include(gmxManageOpenMP)
280 ######################################################################
282 # These need to be done early (before further tests).
283 #####################################################################
288 # These variables should be used for CMake-style lists (ie. separated
289 # by semicolons) of additional compiler flags which are not generated
290 # in gmxCFlags nor are SIMD or MPI related.
292 # TODO These variables should be consolidated into
293 # EXTRA_COMPILER_FLAGS so that we we don't perpetrate bugs where
294 # things that work in C compilation (e.g. merging from old branches)
295 # might not also work for C++ compilation.
296 set(EXTRA_C_FLAGS "")
297 set(EXTRA_CXX_FLAGS "")
299 # Run through a number of tests for buggy compilers and other issues
300 include(gmxTestCompilerProblems)
301 gmx_test_compiler_problems()
303 # Implement double-precision option. This is complicated because we
304 # need installed headers to use the precision mode of the build that
305 # produced the library, but cannot use config.h in that case. We also
306 # want such variables to always have a definition, because #if is more
307 # robust than #ifdef. So, we put this value on the compiler command
310 set(GMX_DOUBLE_VALUE 1)
312 set(GMX_DOUBLE_VALUE 0)
314 add_definitions(-DGMX_DOUBLE=${GMX_DOUBLE_VALUE})
315 list(APPEND INSTALLED_HEADER_DEFINITIONS "-DGMX_DOUBLE=${GMX_DOUBLE_VALUE}")
317 option(GMX_IMD "Enable Interactive Molecular Dynamics (IMD) sessions, e.g. with VMD" ON)
318 if(GMX_IMD AND WIN32)
319 list(APPEND GMX_EXTRA_LIBRARIES "wsock32")
324 ########################################################################
325 # Basic system tests (standard libraries, headers, functions, types) #
326 ########################################################################
327 include(CheckIncludeFiles)
328 include(CheckIncludeFileCXX)
329 check_include_files(unistd.h HAVE_UNISTD_H)
330 check_include_files(pwd.h HAVE_PWD_H)
331 check_include_files(dirent.h HAVE_DIRENT_H)
332 check_include_files(time.h HAVE_TIME_H)
333 check_include_files(sys/time.h HAVE_SYS_TIME_H)
334 check_include_files(io.h HAVE_IO_H)
335 check_include_files(sched.h HAVE_SCHED_H)
336 check_include_files(xmmintrin.h HAVE_XMMINTRIN_H)
338 include(CheckCXXSymbolExists)
339 check_cxx_symbol_exists(gettimeofday sys/time.h HAVE_GETTIMEOFDAY)
340 check_cxx_symbol_exists(sysconf unistd.h HAVE_SYSCONF)
341 check_cxx_symbol_exists(nice unistd.h HAVE_NICE)
342 check_cxx_symbol_exists(fsync unistd.h HAVE_FSYNC)
343 check_cxx_symbol_exists(_fileno stdio.h HAVE__FILENO)
344 check_cxx_symbol_exists(fileno stdio.h HAVE_FILENO)
345 check_cxx_symbol_exists(_commit io.h HAVE__COMMIT)
346 check_cxx_symbol_exists(sigaction signal.h HAVE_SIGACTION)
348 # We cannot check for the __builtins as symbols, but check if code compiles
349 check_cxx_source_compiles("int main(){ return __builtin_clz(1);}" HAVE_BUILTIN_CLZ)
350 check_cxx_source_compiles("int main(){ return __builtin_clzll(1);}" HAVE_BUILTIN_CLZLL)
352 check_cxx_source_compiles("#include <intrin.h>\n int main(){unsigned long r;unsigned long i=1;_BitScanReverse(&r,i);return r;}" HAVE_BITSCANREVERSE)
353 check_cxx_source_compiles("#include <intrin.h>\n int main(){unsigned long r;unsigned __int64 i=1;_BitScanReverse64(&r,i);return r;}" HAVE_BITSCANREVERSE64)
354 elseif(CMAKE_CXX_COMPILER_ID MATCHES "XL")
355 check_cxx_source_compiles("int main(){ return __cntlz4(1);}" HAVE_CNTLZ4)
356 check_cxx_source_compiles("int main(){ return __cntlz8(1);}" HAVE_CNTLZ8)
359 include(CheckLibraryExists)
360 find_library(HAVE_LIBM m)
361 mark_as_advanced(HAVE_LIBM)
362 check_library_exists(rt clock_gettime "" HAVE_CLOCK_GETTIME)
363 check_library_exists(m feenableexcept "" HAVE_FEENABLEEXCEPT)
364 check_library_exists(m fedisableexcept "" HAVE_FEDISABLEEXCEPT)
366 include(TestSchedAffinity)
367 test_sched_affinity(HAVE_SCHED_AFFINITY)
369 # Aligned memory allocation. We need to check for both mm_malloc(),
370 # posix_memalign(), memalign(), and on windows also _aligned_malloc()
371 include(gmxTestMMMalloc)
372 gmx_test_mm_malloc(HAVE__MM_MALLOC)
373 check_cxx_symbol_exists(posix_memalign stdlib.h HAVE_POSIX_MEMALIGN)
374 check_cxx_symbol_exists(memalign stdlib.h HAVE_MEMALIGN)
376 # No need to waste time on this test on platforms where it will never be true
377 check_cxx_symbol_exists(_aligned_malloc stdlib.h HAVE__ALIGNED_MALLOC)
380 include(TestBigEndian)
381 test_big_endian(GMX_INTEGER_BIG_ENDIAN)
383 gmx_set_boolean(GMX_USE_NICE "HAVE_UNISTD_H AND HAVE_NICE")
385 ########################################################################
386 #Process MPI settings
387 ########################################################################
388 include(gmxManageMPI)
390 ########################################################################
391 #Process MiMiC settings
392 ########################################################################
393 include(gmxManageMimic)
395 ########################################################################
396 #Process shared/static library settings
397 ########################################################################
398 include(gmxManageSharedLibraries)
401 ########################################################################
402 # Specify install locations
403 ########################################################################
404 # Use GNUInstallDirs to set paths on multiarch systems.
405 include(GNUInstallDirs)
407 set(GMX_INSTALL_DATASUBDIR "gromacs" CACHE STRING "Subdirectory for GROMACS data under CMAKE_INSTALL_DATADIR")
408 mark_as_advanced(GMX_INSTALL_DATASUBDIR)
410 # Internal convenience so we do not have to join two path segments in the code
411 set(GMX_INSTALL_GMXDATADIR ${CMAKE_INSTALL_DATADIR}/${GMX_INSTALL_DATASUBDIR})
413 # If the nesting level wrt. the installation root is changed,
414 # gromacs-config.cmake.cmakein needs to be adapted.
415 set(GMX_INSTALL_CMAKEDIR ${CMAKE_INSTALL_DATAROOTDIR}/cmake)
417 # TODO: Make GMXRC adapt if this is changed
418 set(GMX_INSTALL_PKGCONFIGDIR ${CMAKE_INSTALL_LIBDIR}/pkgconfig)
420 list(APPEND INSTALLED_HEADER_INCLUDE_DIRS ${CMAKE_INSTALL_INCLUDEDIR})
422 # Binary and library suffix options
423 include(gmxManageSuffixes)
426 ########################################################################
427 # Find external packages #
428 ########################################################################
430 # Unconditionally find the package, as it is also required for unit
431 # tests. This exports LIBXML2_FOUND, which we should not use because
432 # it does not tell us that linking will succeed. Instead, we test that
434 #if(DEFINED LIBXML2_LIBRARIES)
435 # set(LibXml2_FIND_QUIETLY TRUE)
437 #find_package(LibXml2)
438 #include(gmxTestLibXml2)
439 #gmx_test_libxml2(HAVE_LIBXML2)
440 #option(GMX_XML "Use libxml2 to parse xml files (currently has no effect)" ${HAVE_LIBXML2})
442 #mark_as_advanced(GMX_XML)
443 # Don't actually do anything, since libxml2 is currently not used by libgromacs
444 #if(GMX_XML AND NOT HAVE_LIBXML2)
445 # message(FATAL_ERROR "libxml2 not found. Set GMX_XML=OFF to compile without XML support")
448 # include_directories(${LIBXML2_INCLUDE_DIR})
449 # set(PKG_XML libxml-2.0)
450 # set(XML_LIBRARIES ${LIBXML2_LIBRARIES})
453 option(GMX_HWLOC "Use hwloc portable hardware locality library" OFF)
456 # Find quietly the second time.
457 if (HWLOC_FIND_QUIETLY_AFTER_FIRST_RUN)
458 set(HWLOC_FIND_QUIETLY TRUE)
460 find_package(HWLOC 1.5)
463 if (HWLOC_LIBRARIES MATCHES ".a$")
464 set(_STATIC_HWLOC TRUE)
467 gmx_check_if_changed(HWLOC_FOUND_CHANGED HWLOC_FOUND)
468 if (_STATIC_HWLOC AND HWLOC_FOUND_CHANGED AND NOT GMX_HWLOC_FORCE)
469 message(STATUS "Static hwloc library found, will not attempt using it as it could lead to link-time errors. To use the detected library, manually set GMX_HWLOC=ON and you will likely have to pass appropriate linker flags too to satisfy the link-time dependencies of your hwloc library. Try \"pkg-config --libs --static hwloc\" for suggestions on what you will need.")
470 set(GMX_USE_HWLOC OFF)
472 set(GMX_USE_HWLOC ON)
476 include_directories(SYSTEM ${HWLOC_INCLUDE_DIRS})
477 list(APPEND GMX_EXTRA_LIBRARIES ${HWLOC_LIBRARIES})
479 elseif(GMX_HWLOC_FORCE)
480 message(FATAL_ERROR "HWLOC package support required, but not found.")
483 if (HWLOC_FOUND AND HWLOC_VERSION VERSION_LESS "2")
484 message(STATUS "Support for hwloc versions 1.x is deprecated")
487 set(HWLOC_FIND_QUIETLY_AFTER_FIRST_RUN TRUE CACHE INTERNAL "Be quiet during future attempts to find HWLOC")
490 option(GMX_EXTERNAL_TINYXML2 "Use external TinyXML-2 instead of compiling the version bundled with GROMACS." OFF)
491 mark_as_advanced(GMX_EXTERNAL_TINYXML2)
492 if(GMX_EXTERNAL_TINYXML2)
493 # Find an external TinyXML-2 library.
494 find_package(TinyXML-2 3.0.0)
495 set(HAVE_TINYXML2 ${TinyXML2_FOUND})
496 if(NOT HAVE_TINYXML2)
497 message(FATAL_ERROR "External TinyXML-2 could not be found, please adjust your search paths")
501 option(GMX_EXTRAE "Add support for tracing using EXTRAE" OFF)
502 mark_as_advanced(GMX_EXTRAE)
507 include_directories(SYSTEM ${EXTRAE_INCLUDE_DIR})
510 message(FATAL_ERROR "EXTRAE library was not found. Please add the correct path to CMAKE_PREFIX_PATH")
514 option(GMX_X11 "Use X window system" OFF)
517 # X11 includes/libraries are only set in the ngmx subdirectory!
520 "X11 include files and/or libraries were not found. "
521 "Set GMX_X11=OFF to compile without X11 support. "
522 "gmx view will not be available.")
524 include_directories(SYSTEM ${X11_INCLUDE_DIR})
528 # Enable core threading facilities
529 tmpi_enable_core("${CMAKE_SOURCE_DIR}/src/external/thread_mpi/include")
531 # enable MPI functions
534 # If atomics are manually disabled a define is needed because atomics.h doesn't depend on config.h
535 if (TMPI_ATOMICS_DISABLED)
536 add_definitions(-DTMPI_ATOMICS_DISABLED)
539 include(gmxManageTNG)
541 include(gmxManageLmfit)
545 string(TOUPPER "${GMX_GPU}" _gmx_gpu_uppercase)
546 if(${_gmx_gpu_uppercase} STREQUAL "CUDA")
547 include(gmxManageCuda)
548 elseif(${_gmx_gpu_uppercase} STREQUAL "OPENCL")
549 message(STATUS "GPU support with OpenCL is deprecated. It is still fully supported (and "
550 "recommended for AMD and Intel GPUs). It may be replaced by different approaches in "
551 "future releases of GROMACS.")
552 include(gmxManageOpenCL)
553 elseif(${_gmx_gpu_uppercase} STREQUAL "SYCL")
554 include(gmxManageSYCL)
557 message(WARNING "To use GPU acceleration efficiently, mdrun requires OpenMP multi-threading, which is currently not enabled.")
562 # For build with CUDA and Lib-MPI, check if underlying MPI implementation is CUDA-aware
563 # CUDA-aware MPI allows direct GPU communication without staging data through host
564 if(GMX_GPU_CUDA AND GMX_LIB_MPI)
565 include(gmxManageCudaAwareMPI)
567 set(HAVE_CUDA_AWARE_MPI 0)
575 set(GMX_NATIVE_WINDOWS 1)
576 # This makes windows.h not declare min/max as macros that would break
577 # C++ code using std::min/std::max.
578 add_definitions(-DNOMINMAX)
581 option(GMX_BUILD_UNITTESTS "Build unit tests with BUILD_TESTING" ON)
582 mark_as_advanced(GMX_BUILD_UNITTESTS)
583 gmx_add_cache_dependency(GMX_BUILD_UNITTESTS BOOL BUILD_TESTING OFF)
585 ########################################################################
586 # Our own GROMACS tests
587 ########################################################################
589 include_directories(SYSTEM ${CMAKE_SOURCE_DIR}/src/external)
591 include(gmxTestInlineASM)
592 gmx_test_inline_asm_gcc_x86(GMX_X86_GCC_INLINE_ASM)
594 include(gmxSetBuildInformation)
595 gmx_set_build_information()
597 # Anything but truly ancient x86 hardware should support rdtscp, so we enable it by default.
598 # The inline assembly calling it is only ever compiled on x86, so defaulting to ON is OK.
599 option(GMX_USE_RDTSCP "Use low-latency RDTSCP instruction for x86 CPU-based timers for mdrun execution; might need to be off when compiling for heterogeneous environments" ON)
600 mark_as_advanced(GMX_USE_RDTSCP)
602 include(gmxTestLargeFiles)
603 gmx_test_large_files(GMX_LARGEFILES)
605 include(gmxTestSignal)
606 gmx_test_sigusr1(HAVE_SIGUSR1)
608 include(gmxTestPipes)
609 gmx_test_pipes(HAVE_PIPES)
612 gmx_test_xdr(GMX_SYSTEM_XDR)
613 # Darwin has system XDR, but it uses a three-argument flavour of
614 # xdrproc_t that it guarantees will still work if you pass the normal
615 # two-argument xdr filters, but gcc 8 warns about the cast necessary
616 # to do that, so it's simpler to just use our own XDR library.
618 # TODO It would be better to craft a cmake test which fails if such
619 # XDR operations cause warnings, and succeeds otherwise, because it is
620 # generally preferable to use system libraries where possible.
621 if(NOT GMX_SYSTEM_XDR OR CMAKE_SYSTEM_NAME STREQUAL "Darwin")
622 set(GMX_INTERNAL_XDR 1)
626 ##################################################
627 # Process SIMD instruction settings
628 ##################################################
629 # This checks what flags to add in order to
630 # support the SIMD instructions we need, it sets
631 # correct defines for the SIMD instructions supported,
632 # and adds advanced options to control accuracy
633 # for SIMD math operations.
634 include(gmxManageSimd)
637 ##################################################
638 # Process FFT library settings
639 ##################################################
640 include(gmxManageFFTLibraries)
643 include(gmxManageLinearAlgebraLibraries)
645 include(gmxManagePluginSupport)
646 gmx_manage_plugin_support()
649 if(NOT GMX_VMD_PLUGIN_PATH)
654 # People might want to customize the default location for the DSSP binary
655 set(GMX_DSSP_PROGRAM_PATH "/usr/local/bin/dssp"
657 "The default location to use for the DSSP binary")
658 mark_as_advanced(GMX_DSSP_PROGRAM_PATH)
660 # Link real-time library for POSIX timers. The check for clock_gettime
661 # confirms the linkability of rt.
662 if(HAVE_TIME_H AND HAVE_UNISTD_H AND HAVE_CLOCK_GETTIME)
663 list(APPEND GMX_EXTRA_LIBRARIES rt)
666 # Math and thread libraries must often come after all others when linking...
668 list(APPEND GMX_PUBLIC_LIBRARIES m)
671 option(GMX_NACL "Configure for Native Client builds" OFF)
673 list(APPEND GMX_EXTRA_LIBRARIES nosys)
674 set(GMX_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -lnosys")
675 # TODO: Is this still necessary with the check for its presence?
679 mark_as_advanced(GMX_NACL)
682 set(COREWRAP_INCLUDE_DIR "${CMAKE_SOURCE_DIR}/../corewrap" CACHE STRING
683 "Path to swindirect.h")
684 include_directories(${COREWRAP_INCLUDE_DIR})
687 option(GMX_BUILD_HELP "Build completions (requires that compiled binaries can be executed on build host) and install man pages if built (requires building the 'man' target manually)" OFF)
688 mark_as_advanced(GMX_BUILD_HELP)
689 if (GMX_BUILD_HELP AND SOURCE_IS_SOURCE_DISTRIBUTION AND BUILD_IS_INSOURCE)
691 "Rebuilding shell completions or man pages is not supported for "
692 "in-source builds from a source distribution. "
693 "Set GMX_BUILD_HELP=OFF or do an out-of-source build to proceed.")
696 if (GMX_BUILD_FOR_COVERAGE)
697 # Set flags for coverage build here instead having to do so manually
698 set(CMAKE_C_FLAGS "-g --coverage")
699 set(CMAKE_CXX_FLAGS "-g --coverage")
702 # # # # # # # # # # NO MORE TESTS AFTER THIS LINE! # # # # # # # # # # #
703 # these are set after everything else
704 if (NOT GMX_SKIP_DEFAULT_CFLAGS)
705 set(CMAKE_EXE_LINKER_FLAGS "${FFT_LINKER_FLAGS} ${MPI_LINKER_FLAGS} ${CMAKE_EXE_LINKER_FLAGS} ${DISABLE_SYCL_CXX_FLAGS}")
706 set(CMAKE_SHARED_LINKER_FLAGS "${FFT_LINKER_FLAGS} ${MPI_LINKER_FLAGS} ${CMAKE_SHARED_LINKER_FLAGS} ${DISABLE_SYCL_CXX_FLAGS}")
708 message("Recommended flags which are not added because GMX_SKIP_DEFAULT_CFLAGS=yes:")
709 message("CMAKE_C_FLAGS: ${SIMD_C_FLAGS};${MPI_COMPILE_FLAGS};${EXTRA_C_FLAGS};${GMXC_CFLAGS}")
710 foreach(build_type ${build_types_with_explicit_flags})
711 message("CMAKE_C_FLAGS_${build_type}: ${GMXC_CFLAGS_${build_type}}")
713 message("CMAKE_CXX_FLAGS: ${SIMD_CXX_FLAGS};${MPI_COMPILE_FLAGS};${EXTRA_CXX_FLAGS};${GMXC_CXXFLAGS}")
714 foreach(build_type ${build_types_with_explicit_flags})
715 message("CMAKE_CXX_FLAGS_${build_type}: ${GMXC_CXXFLAGS_${build_type}}")
717 message("CMAKE_EXE_LINKER_FLAGS: ${FFT_LINKER_FLAGS} ${MPI_LINKER_FLAGS}")
718 message("CMAKE_SHARED_LINKER_FLAGS: ${FFT_LINKER_FLAGS} ${MPI_LINKER_FLAGS}")
720 # Allow `admin` directory to be easily conveyed to nested CMake commands.
721 set(GMX_ADMIN_DIR ${CMAKE_SOURCE_DIR}/admin)
723 ################################################################
724 # Shared library load path settings
725 ################################################################
726 if(NOT GMX_BUILD_SHARED_EXE)
728 set(CMAKE_SKIP_RPATH TRUE)
729 set(CMAKE_EXE_LINK_DYNAMIC_C_FLAGS) # remove -Wl,-Bdynamic
730 set(CMAKE_EXE_LINK_DYNAMIC_CXX_FLAGS)
732 # The build folder always has bin/ and lib/; if we are also going to
733 # install to lib/, then the installation RPATH works also in the build
734 # tree. This makes installation slightly faster (no need to rewrite the
735 # RPATHs), and makes the binaries in the build tree relocatable.
736 if(CMAKE_INSTALL_LIBDIR STREQUAL "lib")
737 set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
738 set(CMAKE_BUILD_WITH_INSTALL_NAME_DIR TRUE)
740 # Set the RPATH as relative to the executable location to make the
741 # binaries relocatable.
742 if(CMAKE_SYSTEM_NAME STREQUAL "Darwin") #Assume OS X >=10.5
743 set(CMAKE_INSTALL_RPATH "@loader_path/../${CMAKE_INSTALL_LIBDIR}")
744 set(CMAKE_INSTALL_NAME_DIR ${CMAKE_INSTALL_RPATH})
746 set(CMAKE_INSTALL_RPATH "\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}")
748 set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
749 set(CMAKE_MACOSX_RPATH 1)
752 #COPYING file: Only necessary for binary distributions.
753 #Simpler to always install.
754 install(FILES COPYING DESTINATION ${GMX_INSTALL_GMXDATADIR} COMPONENT data)
757 include(tests/CheckTarget.cmake)
760 # TODO: Determine control flow and defaults for package installation and testing use cases.
761 # Ref: https://gitlab.com/gromacs/gromacs/-/issues/2896
762 option(GMX_PYTHON_PACKAGE "Configure gmxapi Python package" OFF)
763 mark_as_advanced(GMX_PYTHON_PACKAGE)
765 find_package(ImageMagick QUIET COMPONENTS convert)
766 include(gmxTestImageMagick)
767 GMX_TEST_IMAGEMAGICK(IMAGE_CONVERT_POSSIBLE)
768 # TODO: Resolve circular dependency between docs, gromacs, and python_packaging
769 add_subdirectory(docs)
770 add_subdirectory(share)
771 add_subdirectory(scripts)
772 add_subdirectory(api)
773 add_subdirectory(src)
776 add_subdirectory(tests)
779 if(GMX_PYTHON_PACKAGE)
780 add_subdirectory(python_packaging)
783 gmx_cpack_write_config()
785 #######################
787 #######################
788 CONFIGURE_FILE( "${CMAKE_CURRENT_SOURCE_DIR}/cmake/cmake_uninstall.cmake.in"
789 "${CMAKE_CURRENT_BINARY_DIR}/cmake/cmake_uninstall.cmake"
791 ###########################
792 ADD_CUSTOM_TARGET(uninstall
793 "${CMAKE_COMMAND}" -P
794 "${CMAKE_CURRENT_BINARY_DIR}/cmake/cmake_uninstall.cmake")
795 ###########################
796 set_directory_properties(PROPERTIES
797 ADDITIONAL_MAKE_CLEAN_FILES "install_manifest.txt")