.gitlab-ci.yml

   1 include:
   2   - local: '/admin/ci-templates/.include-template.yml'
   3
   4 .configure-extends-template:
   5   extends:
   6     - .configure-build-template
   7     - .no-cache-template
   8     - .variables-template
   9     - .tags-template
  10
  11 .configure-release-extends-template:
  12   extends:
  13     - .configure-build-release-template
  14     - .no-cache-template
  15     - .variables-template
  16     - .tags-template
  17
  18 .build-extends-template:
  19   extends:
  20     - .binary-build-template
  21     - .build-cache-template
  22     - .variables-template
  23     - .tags-template
  24
  25 .test-extends-template:
  26   extends:
  27     - .test-base-template
  28     - .pull-cache-template
  29     - .test-script-template
  30     - .variables-template
  31     - .tags-template
  32
  33 .regressiontests-extends-template:
  34   extends:
  35     - .no-cache-template
  36     - .variables-template
  37     - .tags-template
  38
  39 # CI is organized into stages so that if early stages fail
  40 # the later ones are not run.
  41 stages:
  42   # Initial test build for checking simple compilation and getting regressiontest repo
  43   - pre-build
  44   # Configuration for building and testing
  45   - configure-build
  46   # Build GROMACS in multiple configurations
  47   - build
  48   # Test each configuration, perhaps in multiple ways
  49   - test
  50   # Generate documentation files
  51   - documentation
  52   # Check documentation from source code for errors
  53   - source-check
  54   # Linting, docs, static analysis, coverage, code analysis...
  55   - post-test
  56   # Nightly work to configure builds
  57   - nightly-configure
  58   # Nightly build stage
  59   - nightly-build
  60   # Nightly deploy stage
  61   - nightly-deploy
  62   # Release work for packaging code
  63   - release-package
  64   # Release checksum verification
  65   - release-verify
  66   # Configure code for release builds
  67   - release-configure
  68   # Release work for packaging code
  69   - release-build
  70   # Tests for release code
  71   - release-tests
  72   # Prepare for deploying artifacts
  73   - release-prepare-deploy
  74   # Deploy stage for release builds
  75   - release-deploy
  76
  77 # Templates for configuration stage
  78 .configure-gcc:
  79   extends:
  80     - .configure-extends-template
  81     - .gcc-before-script-template
  82     - .build-gcc-template
  83
  84 .configure-gcc-release:
  85   extends:
  86     - .configure-release-extends-template
  87     - .gcc-before-script-template
  88     - .build-gcc-template
  89
  90 .configure-clang:
  91   extends:
  92     - .configure-extends-template
  93     - .clang-before-script-template
  94     - .build-clang-template
  95
  96 .configure-clang-release:
  97   extends:
  98     - .configure-release-extends-template
  99     - .clang-before-script-template
 100     - .build-clang-template
 101
 102 .configure-docs:
 103   extends:
 104     - .configure-extends-template
 105     - .configure-docs-template
 106     - .documentation-before-script-template
 107
 108 .configure-docs-release:
 109   extends:
 110     - .configure-extends-template
 111     - .configure-docs-release-template
 112     - .documentation-before-script-template
 113
 114 # Templates for build stage
 115 .build-archive:
 116   extends:
 117     - .build-extends-template
 118     - .documentation-before-script-template
 119     - .build-docs-binary-template
 120     - .archive-build-template
 121
 122 .build-gcc:
 123   extends:
 124     - .build-extends-template
 125     - .gcc-before-script-template
 126     - .build-gcc-template
 127
 128 .build-clang:
 129   extends:
 130     - .build-extends-template
 131     - .clang-before-script-template
 132     - .build-clang-template
 133
 134 .build-docs-binary:
 135   extends:
 136     - .build-extends-template
 137     - .build-cache-template
 138     - .build-docs-binary-template
 139     - .documentation-before-script-template
 140
 141 .build-docs-webpage:
 142   extends:
 143     - .binary-build-template
 144     - .variables-template
 145     - .tags-template
 146     - .no-cache-template
 147     - .build-docs-webpage-template
 148     - .documentation-before-script-template
 149
 150 .build-cuda-gcc:
 151   extends:
 152     - .build-gcc
 153     - .build-cuda-template
 154
 155 # Templates for test stage
 156 .test-gcc:
 157   extends:
 158     - .test-extends-template
 159     - .gcc-before-script-template
 160     - .test-gcc-template
 161
 162 .test-clang:
 163   extends:
 164     - .test-extends-template
 165     - .clang-before-script-template
 166     - .test-clang-template
 167
 168 # Special job to package regressiontest files and have them available for testing
 169 # Runs during pre-build
 170 prepare-regressiontests:
 171   extends:
 172     - .regressiontests-extends-template
 173     - .regressiontests-template
 174
 175 prepare-release-version:
 176   extends:
 177     - .regressiontests-extends-template
 178     - .release-version-template
 179
 180 # Initial build that always needs to pass before follow-up stages run
 181 simple-build:
 182   extends:
 183     - .simple-build-template
 184     - .build-cache-template
 185     - .variables-template
 186     - .tags-template
 187     - .gcc-before-script-template
 188     - .build-gcc-template
 189     - .gcc7-template
 190   variables:
 191     COMPILER_MAJOR_VERSION: 7
 192     BUILD_DIR: simple-build
 193   except:
 194     variables:
 195       - $GROMACS_RELEASE
 196
 197 # Jobs running in first pre-build stage
 198 configure-gcc-7:
 199   extends:
 200     - .configure-gcc
 201     - .gcc7-template
 202   needs:
 203     - job: simple-build
 204       artifacts: false
 205   variables:
 206     COMPILER_MAJOR_VERSION: 7
 207   except:
 208     variables:
 209       - $GROMACS_RELEASE
 210
 211 configure-gcc-7-gmxapi:
 212   extends:
 213     - .configure-gcc
 214     - .configure-gmxapi-template
 215     - .gcc7-template
 216   needs:
 217     - job: simple-build
 218       artifacts: false
 219   variables:
 220     COMPILER_MAJOR_VERSION: 7
 221   except:
 222     variables:
 223       - $GROMACS_RELEASE
 224
 225 configure-gcc-7-double:
 226   extends:
 227     - .configure-gcc
 228     - .gcc7-template
 229   needs:
 230     - job: simple-build
 231       artifacts: false
 232   variables:
 233     COMPILER_MAJOR_VERSION: 7
 234     CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
 235   except:
 236     variables:
 237       - $GROMACS_RELEASE
 238
 239 configure-gcc-8:
 240   extends:
 241     - .configure-gcc
 242     - .gcc8-template
 243   needs:
 244     - job: simple-build
 245       artifacts: false
 246   variables:
 247     COMPILER_MAJOR_VERSION: 8
 248   except:
 249     variables:
 250       - $GROMACS_RELEASE
 251
 252 configure-gcc-7-simd-sse41:
 253   extends:
 254     - .configure-gcc
 255     - .gcc7-template
 256   needs:
 257     - job: simple-build
 258       artifacts: false
 259   variables:
 260     COMPILER_MAJOR_VERSION: 7
 261     CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=SSE4.1"
 262   except:
 263     variables:
 264       - $GROMACS_RELEASE
 265
 266 configure-clang-7:
 267   extends:
 268     - .configure-clang
 269     - .clang7-template
 270   needs:
 271     - job: simple-build
 272       artifacts: false
 273   variables:
 274     COMPILER_MAJOR_VERSION: 7
 275   except:
 276     variables:
 277       - $GROMACS_RELEASE
 278
 279 configure-clang-7-gmxapi:
 280   extends:
 281     - .configure-clang
 282     - .configure-gmxapi-template
 283     - .clang7-template
 284   needs:
 285     - job: simple-build
 286       artifacts: false
 287   variables:
 288     COMPILER_MAJOR_VERSION: 7
 289   except:
 290     variables:
 291       - $GROMACS_RELEASE
 292
 293 configure-clang-8:
 294   extends:
 295     - .configure-clang
 296     - .clang8-template
 297   needs:
 298     - job: simple-build
 299       artifacts: false
 300   variables:
 301     COMPILER_MAJOR_VERSION: 8
 302   except:
 303     variables:
 304       - $GROMACS_RELEASE
 305
 306 # For version of clang before 7, we need to always provide the full version
 307 # Use something like this instead in the download script:
 308 # APT_COMPILER_VERSION=$(($COMPILER_MAJOR_VERSION < 7 ? "${COMPILER_MAJOR_VERSION}.0" : $COMPILER_MAJOR_VERSION))
 309 configure-clang-6:
 310   extends:
 311     - .configure-clang
 312     - .clang6-template
 313   needs:
 314     - job: simple-build
 315       artifacts: false
 316   variables:
 317     COMPILER_MAJOR_VERSION: "6.0"
 318     CMAKE_MPI_OPTIONS: -DGMX_OPENMP=OFF
 319   except:
 320     variables:
 321       - $GROMACS_RELEASE
 322
 323 configure-clang-tidy:
 324   extends:
 325     - .configure-clang
 326     - .clang7-template
 327   needs:
 328     - job: simple-build
 329       artifacts: false
 330   variables:
 331     BUILD_DIR: build-clang-tidy
 332     COMPILER_MAJOR_VERSION: 7
 333     CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON
 334     EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
 335   except:
 336     variables:
 337       - $GROMACS_RELEASE
 338
 339 configure-docs:
 340   extends:
 341     - .configure-docs
 342   needs:
 343     - job: simple-build
 344       artifacts: false
 345   variables:
 346     BUILD_DIR: build-docs
 347     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 348   except:
 349     variables:
 350       - $GROMACS_RELEASE
 351
 352 configure-docs-gmxapi:
 353   extends:
 354     - .configure-docs
 355     - .configure-gmxapi-template
 356   needs:
 357     - job: simple-build
 358       artifacts: false
 359   variables:
 360     BUILD_DIR: build-docs-gmxapi
 361     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 362   except:
 363     variables:
 364       - $GROMACS_RELEASE
 365
 366 # Only running in scheduled pipelines that are not release builds
 367 configure-archive-nightly:
 368   stage: nightly-configure
 369   only:
 370     - triggers
 371     - schedules
 372   needs:
 373     - job: simple-build
 374       artifacts: false
 375   except:
 376     variables:
 377       - $GROMACS_RELEASE
 378   extends:
 379     - .configure-docs
 380   variables:
 381     BUILD_DIR: build-package
 382     CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
 383     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
 384     CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
 385
 386 configure-archive-release:
 387   only:
 388     refs:
 389       - web
 390       - triggers
 391       - schedules
 392     variables:
 393       - $GROMACS_RELEASE
 394
 395   extends:
 396     - .configure-docs
 397   variables:
 398     BUILD_DIR: build-package
 399     CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
 400     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
 401     CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
 402
 403 # Jobs running during build stage
 404 build-gcc-7:
 405   extends:
 406     - .build-gcc
 407     - .gcc7-template
 408   needs:
 409     - job: simple-build
 410       artifacts: false
 411     - job: configure-gcc-7
 412       artifacts: true
 413   except:
 414     variables:
 415       - $GROMACS_RELEASE
 416
 417
 418 build-gcc-7-gmxapi:
 419   extends:
 420     - .build-gcc
 421     - .gmxapi-extra-installs
 422     - .gcc7-template
 423   needs:
 424     - job: simple-build
 425       artifacts: false
 426     - job: configure-gcc-7-gmxapi
 427       artifacts: true
 428   except:
 429     variables:
 430       - $GROMACS_RELEASE
 431
 432 build-gcc-7-double:
 433   extends:
 434     - .build-gcc
 435     - .gcc7-template
 436   needs:
 437     - job: simple-build
 438       artifacts: false
 439     - job: configure-gcc-7-double
 440       artifacts: true
 441   except:
 442     variables:
 443       - $GROMACS_RELEASE
 444
 445 build-gcc-8:
 446   extends:
 447     - .build-gcc
 448     - .gcc8-template
 449   needs:
 450     - job: simple-build
 451       artifacts: false
 452     - job: configure-gcc-8
 453       artifacts: true
 454   except:
 455     variables:
 456       - $GROMACS_RELEASE
 457
 458 build-gcc-7-simd-sse41:
 459   extends:
 460     - .build-gcc
 461     - .gcc7-template
 462   needs:
 463     - job: simple-build
 464       artifacts: false
 465     - job: configure-gcc-7-simd-sse41
 466       artifacts: true
 467   except:
 468     variables:
 469       - $GROMACS_RELEASE
 470
 471 build-clang-7:
 472   extends:
 473     - .build-clang
 474     - .clang7-template
 475   needs:
 476     - job: simple-build
 477       artifacts: false
 478     - job: configure-clang-7
 479       artifacts: true
 480   except:
 481     variables:
 482       - $GROMACS_RELEASE
 483
 484 build-clang-7-gmxapi:
 485   extends:
 486     - .build-clang
 487     - .gmxapi-extra-installs
 488     - .clang7-template
 489   needs:
 490     - job: simple-build
 491       artifacts: false
 492     - job: configure-clang-7-gmxapi
 493       artifacts: true
 494   except:
 495     variables:
 496       - $GROMACS_RELEASE
 497
 498 build-clang-8:
 499   extends:
 500     - .build-clang
 501     - .clang8-template
 502   needs:
 503     - job: simple-build
 504       artifacts: false
 505     - job: configure-clang-8
 506       artifacts: true
 507   except:
 508     variables:
 509       - $GROMACS_RELEASE
 510
 511 build-clang-6:
 512   extends:
 513     - .build-clang
 514     - .clang6-template
 515   needs:
 516     - job: simple-build
 517       artifacts: false
 518     - job: configure-clang-6
 519       artifacts: true
 520   except:
 521     variables:
 522       - $GROMACS_RELEASE
 523
 524 # Jobs running during test stage
 525 test-gcc-7:
 526   extends:
 527     - .test-gcc
 528     - .gcc7-template
 529   needs:
 530     - job: simple-build
 531       artifacts: false
 532     - job: build-gcc-7
 533   except:
 534     variables:
 535       - $GROMACS_RELEASE
 536
 537 test-gcc-7-gmxapi:
 538   extends:
 539     - .test-gcc
 540     - .gmxapi-extra-installs
 541     - .gcc7-template
 542   needs:
 543     - job: simple-build
 544       artifacts: false
 545     - job: build-gcc-7-gmxapi
 546   except:
 547     variables:
 548       - $GROMACS_RELEASE
 549
 550 test-gcc-7-double:
 551   extends:
 552     - .test-gcc
 553     - .gcc7-template
 554   needs:
 555     - job: simple-build
 556       artifacts: false
 557     - job: build-gcc-7-double
 558   except:
 559     variables:
 560       - $GROMACS_RELEASE
 561
 562 test-gcc-8:
 563   extends:
 564     - .test-gcc
 565     - .gcc8-template
 566   needs:
 567     - job: simple-build
 568       artifacts: false
 569     - job: build-gcc-8
 570   except:
 571     variables:
 572       - $GROMACS_RELEASE
 573
 574 test-gcc-7-simd-sse41:
 575   extends:
 576     - .test-gcc
 577     - .gcc7-template
 578   needs:
 579     - job: simple-build
 580       artifacts: false
 581     - job: build-gcc-7-simd-sse41
 582   except:
 583     variables:
 584       - $GROMACS_RELEASE
 585
 586 test-clang-7:
 587   extends:
 588     - .test-clang
 589     - .clang7-template
 590   needs:
 591     - job: simple-build
 592       artifacts: false
 593     - job: build-clang-7
 594   except:
 595     variables:
 596       - $GROMACS_RELEASE
 597
 598 test-clang-7-gmxapi:
 599   extends:
 600     - .test-clang
 601     - .gmxapi-extra-installs
 602     - .clang7-template
 603   needs:
 604     - job: simple-build
 605       artifacts: false
 606     - job: build-clang-7-gmxapi
 607   except:
 608     variables:
 609       - $GROMACS_RELEASE
 610
 611 test-clang-8:
 612   extends:
 613     - .test-clang
 614     - .clang8-template
 615   needs:
 616     - job: simple-build
 617       artifacts: false
 618     - job: build-clang-8
 619   except:
 620     variables:
 621       - $GROMACS_RELEASE
 622
 623 test-clang-6:
 624   extends:
 625     - .test-clang
 626     - .clang6-template
 627   needs:
 628     - job: simple-build
 629       artifacts: false
 630     - job: build-clang-6
 631   except:
 632     variables:
 633       - $GROMACS_RELEASE
 634
 635 # Jobs running in source checking stage
 636 build-clang-tidy:
 637   extends:
 638     - .build-clang
 639     - .clang7-template
 640   stage: source-check
 641   needs:
 642     - job: simple-build
 643       artifacts: false
 644     - job: configure-clang-tidy
 645       artifacts: true
 646   variables:
 647     BUILD_DIR: build-clang-tidy
 648     COMPILER_MAJOR_VERSION: 7
 649     EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
 650   except:
 651     variables:
 652       - $GROMACS_RELEASE
 653
 654 run-clang-format:
 655   extends:
 656     - .binary-build-template
 657     - .no-cache-template
 658     - .variables-template
 659     - .tags-template
 660     - .clang-before-script-template
 661     - .build-clang-template
 662     - .clang7-template
 663   stage: source-check
 664   when: always
 665   needs:
 666     - job: simple-build
 667       artifacts: false
 668   variables:
 669     KUBERNETES_CPU_LIMIT: 1
 670     KUBERNETES_CPU_REQUEST: 1
 671     KUBERNETES_MEMORY_LIMIT: 2Gi
 672     COMPILER_MAJOR_VERSION: 7
 673     EXTRA_INSTALLS: clang-format-$COMPILER_MAJOR_VERSION
 674   except:
 675     variables:
 676       - $GROMACS_RELEASE
 677   script:
 678     - export CLANG_FORMAT=clang-format-$COMPILER_MAJOR_VERSION
 679     - admin/clang-format.sh check --rev=HEAD^ --warnings=clang-format.log
 680     - grep -iq "needs formatting" clang-format.log | tee formatting.txt || true
 681     - if [ -s formatting.txt ] ; then echo "clang-format.sh found issues"; exit 1; fi
 682   artifacts:
 683     when: on_failure
 684     paths:
 685       - clang-format.log
 686       - formatting.txt
 687
 688 run-copyright-check:
 689   extends:
 690     - .binary-build-template
 691     - .no-cache-template
 692     - .variables-template
 693     - .tags-template
 694     - .clang-before-script-template
 695     - .build-clang-template
 696     - .clang7-template
 697   stage: source-check
 698   when: always
 699   needs:
 700     - job: simple-build
 701       artifacts: false
 702   variables:
 703     KUBERNETES_CPU_LIMIT: 1
 704     KUBERNETES_CPU_REQUEST: 1
 705     KUBERNETES_MEMORY_LIMIT: 2Gi
 706   except:
 707     variables:
 708       - $GROMACS_RELEASE
 709   script:
 710     - admin/copyright.sh check --rev=HEAD^ --warnings=copyright.log
 711     - grep -iq "copyright year" copyright.log | tee years.log || true
 712     - grep -iq "copyright header" copyright.log | tee headers.log || true
 713     - if [[ -s years.log || -s headers.log ]] ; then
 714       echo "Copyright information needs updating" ;
 715       exit 1 ;
 716       fi
 717   artifacts:
 718     when: on_failure
 719     paths:
 720       - copyright.log
 721       - years.log
 722       - headers.log
 723
 724 run-check-source:
 725   extends:
 726     - .no-cache-template
 727     - .variables-template
 728     - .tags-template
 729     - .build-docs-binary-template
 730     - .documentation-before-script-template
 731   stage: source-check
 732   needs:
 733     - job: simple-build
 734       artifacts: false
 735     - job: build-docs
 736       artifacts: true
 737   variables:
 738     KUBERNETES_CPU_LIMIT: 1
 739     KUBERNETES_CPU_REQUEST: 1
 740     KUBERNETES_MEMORY_LIMIT: 2Gi
 741     BUILD_DIR: build-docs
 742     COMPILER_MAJOR_VERSION: 7
 743   except:
 744     variables:
 745       - $GROMACS_RELEASE
 746   script:
 747     - cd $BUILD_DIR
 748     - cmake --build . --target check-source
 749     - grep -qi "error" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee doxygenError.txt || true
 750     - grep -qi "warning" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee -a doxygenError.txt || true
 751     - if [ -s doxygenError.txt ] ; then echo "Found errors while running doxygen"; exit 1; fi
 752   artifacts:
 753     name: docs-artifacts-$CI_COMMIT_REF_SLUG
 754     when: always
 755     expire_in: 1 week
 756     paths:
 757       - $BUILD_DIR/docs/doxygen/doxygen-xml.log
 758       - $BUILD_DIR/docs/doxygen/check-source.log
 759
 760 # Jobs running during documentation build stage
 761 build-docs:
 762   extends:
 763     - .build-docs-binary
 764   stage: documentation
 765   needs:
 766     - job: simple-build
 767       artifacts: false
 768     - job: configure-docs
 769       artifacts: true
 770   variables:
 771     BUILD_DIR: build-docs
 772   except:
 773     variables:
 774       - $GROMACS_RELEASE
 775
 776 build-docs-gmxapi:
 777   extends:
 778     - .build-docs-binary
 779     - .gmxapi-extra-installs
 780   stage: documentation
 781   needs:
 782     - job: simple-build
 783       artifacts: false
 784     - job: configure-docs-gmxapi
 785       artifacts: true
 786   variables:
 787     BUILD_DIR: build-docs-gmxapi
 788   except:
 789     variables:
 790       - $GROMACS_RELEASE
 791
 792 # Jobs running in post-test stage
 793
 794 # The manual build is built separately so that errors in converting
 795 # Sphinx to LaTeX and compiling can always be found in the
 796 # all-output.txt file, while avoiding many thousands of lines of spam
 797 # from pdflatex for normal builds. This does reduce the available
 798 # parallel utilization, and so increases the build time.
 799 #
 800 # TODO why are the doxygen and sphinx log files disappearing
 801 # TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
 802 webpage:
 803   extends:
 804     - .build-docs-webpage
 805   stage: post-test
 806   needs:
 807     - job: build-docs
 808       artifacts: true
 809     - job: run-check-source
 810       artifacts: false
 811   variables:
 812     BUILD_DIR: build-docs
 813   except:
 814     variables:
 815       - $GROMACS_RELEASE
 816
 817 webpage-gmxapi:
 818   extends:
 819     - .build-docs-webpage
 820     - .gmxapi-extra-installs
 821   stage: post-test
 822   needs:
 823     - job: build-docs-gmxapi
 824       artifacts: true
 825     - job: run-check-source
 826       artifacts: false
 827   variables:
 828     BUILD_DIR: build-docs-gmxapi
 829   except:
 830     variables:
 831       - $GROMACS_RELEASE
 832
 833
 834 # Jobs running in release stage
 835 linkchecker:
 836   extends:
 837     - .build-docs-webpage
 838   stage: nightly-build
 839   dependencies:
 840     - webpage-gmxapi
 841   only:
 842     - schedules
 843     - triggers
 844     - merge_requests
 845     - external_pull_requests
 846   except:
 847     variables:
 848       - $GROMACS_RELEASE
 849   variables:
 850     KUBERNETES_CPU_LIMIT: 1
 851     KUBERNETES_CPU_REQUEST: 1
 852     KUBERNETES_MEMORY_LIMIT: 2Gi
 853     BUILD_DIR: build-docs-gmxapi
 854   script:
 855     - cd $BUILD_DIR
 856     - linkchecker docs/html/index.html -f ../docs/linkcheckerrc -Fxml --ignore-url html-full
 857       --ignore-url html-user --ignore-url html-lib --ignore-url .tar.gz --ignore-url _sources
 858       -o xml
 859   artifacts:
 860     reports:
 861       junit: $BUILD_DIR/linkchecker-out.xml
 862
 863 build-archive-nightly:
 864   extends:
 865     - .build-archive
 866   stage: nightly-build
 867   needs:
 868     - job: simple-build
 869       artifacts: false
 870     - job: configure-archive-nightly
 871       artifacts: true
 872   only:
 873     - triggers
 874     - schedules
 875   except:
 876     variables:
 877       - $GROMACS_RELEASE
 878   variables:
 879     BUILD_DIR: build-package
 880
 881 webpage-nightly:
 882   extends:
 883     - .build-docs-webpage
 884     - .configure-gmxapi-template
 885   stage: nightly-deploy
 886   only:
 887     - triggers
 888     - schedules
 889   except:
 890     variables:
 891       - $GROMACS_RELEASE
 892   needs:
 893     - job: simple-build
 894       artifacts: false
 895     - job: linkchecker
 896       artifacts: false
 897     - job: webpage-gmxapi
 898       artifacts: true
 899   variables:
 900     BUILD_DIR: build-docs-gmxapi
 901   script:
 902     - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
 903   artifacts:
 904     when: always
 905     paths:
 906       - webpage.tar.gz
 907
 908 package-regressiontests-release:
 909   extends:
 910     - .regressiontests-extends-template
 911     - .regressiontests-release-template
 912   needs:
 913     - job: prepare-release-version
 914       artifacts: true
 915   only:
 916     refs:
 917       - triggers
 918       - web
 919       - schedules
 920     variables:
 921       - $GROMACS_RELEASE
 922
 923
 924 package-archive-release:
 925   extends:
 926     - .build-archive
 927   stage: release-package
 928   needs:
 929     - job: configure-archive-release
 930       artifacts: true
 931   only:
 932     refs:
 933       - triggers
 934       - web
 935       - schedules
 936     variables:
 937       - $GROMACS_RELEASE
 938   variables:
 939     BUILD_DIR: build-package
 940
 941 release-verify:
 942   extends:
 943     - .regressiontests-extends-template
 944     - .release-verify-template
 945   only:
 946     refs:
 947       - triggers
 948       - web
 949       - schedules
 950     variables:
 951       - $GROMACS_RELEASE
 952   dependencies:
 953     - package-archive-release
 954     - package-regressiontests-release
 955     - prepare-release-version
 956
 957 webpage-configure-release:
 958   extends:
 959     - .configure-docs-release
 960     - .configure-gmxapi-template
 961     - .no-cache-template
 962   only:
 963     refs:
 964       - web
 965       - schedules
 966       - triggers
 967     variables:
 968       - $GROMACS_RELEASE
 969   dependencies:
 970     - package-archive-release
 971     - package-regressiontests-release
 972     - prepare-release-version
 973   variables:
 974     CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 975
 976 configure-gcc-7-release:
 977   extends:
 978     - .configure-gcc-release
 979     - .no-cache-template
 980     - .gcc7-template
 981   variables:
 982     COMPILER_MAJOR_VERSION: 7
 983     RELEASE_BUILD_DIR: release-builds-gcc
 984   only:
 985     refs:
 986       - web
 987       - schedules
 988       - triggers
 989     variables:
 990       - $GROMACS_RELEASE
 991   dependencies:
 992     - package-archive-release
 993     - package-regressiontests-release
 994     - prepare-release-version
 995
 996 configure-gcc-7-gmxapi-release:
 997   extends:
 998     - .configure-gcc-release
 999     - .configure-gmxapi-template
1000     - .no-cache-template
1001     - .gcc7-template
1002   variables:
1003     COMPILER_MAJOR_VERSION: 7
1004     RELEASE_BUILD_DIR: release-builds-gcc
1005   only:
1006     refs:
1007       - web
1008       - schedules
1009       - triggers
1010     variables:
1011       - $GROMACS_RELEASE
1012   dependencies:
1013     - package-archive-release
1014     - package-regressiontests-release
1015     - prepare-release-version
1016
1017 configure-gcc-7-double-release:
1018   extends:
1019     - .configure-gcc-release
1020     - .no-cache-template
1021     - .gcc7-template
1022   variables:
1023     COMPILER_MAJOR_VERSION: 7
1024     CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
1025     RELEASE_BUILD_DIR: release-builds-gcc
1026   only:
1027     refs:
1028       - web
1029       - schedules
1030       - triggers
1031     variables:
1032       - $GROMACS_RELEASE
1033   dependencies:
1034     - package-archive-release
1035     - package-regressiontests-release
1036     - prepare-release-version
1037
1038 configure-gcc-8-release:
1039   extends:
1040     - .configure-gcc-release
1041     - .no-cache-template
1042     - .gcc8-template
1043   variables:
1044     COMPILER_MAJOR_VERSION: 8
1045     RELEASE_BUILD_DIR: release-builds-gcc
1046   only:
1047     refs:
1048       - web
1049       - schedules
1050       - triggers
1051     variables:
1052       - $GROMACS_RELEASE
1053   dependencies:
1054     - package-archive-release
1055     - package-regressiontests-release
1056     - prepare-release-version
1057
1058 configure-clang-7-release:
1059   extends:
1060     - .configure-clang-release
1061     - .no-cache-template
1062     - .clang7-template
1063   variables:
1064     COMPILER_MAJOR_VERSION: 7
1065     RELEASE_BUILD_DIR: release-builds-clang
1066   only:
1067     refs:
1068       - web
1069       - schedules
1070       - triggers
1071     variables:
1072       - $GROMACS_RELEASE
1073   dependencies:
1074     - package-archive-release
1075     - package-regressiontests-release
1076     - prepare-release-version
1077
1078 configure-clang-7-gmxapi-release:
1079   extends:
1080     - .configure-clang-release
1081     - .configure-gmxapi-template
1082     - .no-cache-template
1083     - .clang7-template
1084   variables:
1085     COMPILER_MAJOR_VERSION: 7
1086     RELEASE_BUILD_DIR: release-builds-clang
1087   only:
1088     refs:
1089       - web
1090       - schedules
1091       - triggers
1092     variables:
1093       - $GROMACS_RELEASE
1094   dependencies:
1095     - package-archive-release
1096     - package-regressiontests-release
1097     - prepare-release-version
1098
1099 configure-clang-8-release:
1100   extends:
1101     - .configure-clang-release
1102     - .no-cache-template
1103     - .clang8-template
1104   variables:
1105     COMPILER_MAJOR_VERSION: 8
1106     RELEASE_BUILD_DIR: release-builds-clang
1107   only:
1108     refs:
1109       - web
1110       - schedules
1111       - triggers
1112     variables:
1113       - $GROMACS_RELEASE
1114   dependencies:
1115     - package-archive-release
1116     - package-regressiontests-release
1117     - prepare-release-version
1118
1119 build-gcc-7-release:
1120   extends:
1121     - .build-gcc
1122     - .gcc7-template
1123   stage: release-build
1124   variables:
1125     BUILD_DIR: release-builds-gcc
1126   needs:
1127     - job: configure-gcc-7-release
1128       artifacts: true
1129   only:
1130     refs:
1131       - web
1132       - schedules
1133       - triggers
1134     variables:
1135       - $GROMACS_RELEASE
1136
1137 build-gcc-7-gmxapi-release:
1138   extends:
1139     - .build-gcc
1140     - .gmxapi-extra-installs
1141     - .gcc7-template
1142   stage: release-build
1143   variables:
1144     BUILD_DIR: release-builds-gcc
1145   needs:
1146     - job: configure-gcc-7-gmxapi-release
1147       artifacts: true
1148   only:
1149     refs:
1150       - web
1151       - schedules
1152       - triggers
1153     variables:
1154       - $GROMACS_RELEASE
1155
1156 build-gcc-7-double-release:
1157   extends:
1158     - .build-gcc
1159     - .gcc7-template
1160   stage: release-build
1161   variables:
1162     BUILD_DIR: release-builds-gcc
1163   needs:
1164     - job: configure-gcc-7-double-release
1165       artifacts: true
1166   only:
1167     refs:
1168       - web
1169       - schedules
1170       - triggers
1171     variables:
1172       - $GROMACS_RELEASE
1173
1174 build-gcc-8-release:
1175   extends:
1176     - .build-gcc
1177     - .gcc8-template
1178   stage: release-build
1179   variables:
1180     BUILD_DIR: release-builds-gcc
1181   needs:
1182     - job: configure-gcc-8-release
1183       artifacts: true
1184   only:
1185     refs:
1186       - web
1187       - schedules
1188       - triggers
1189     variables:
1190       - $GROMACS_RELEASE
1191
1192 build-clang-7-release:
1193   extends:
1194     - .build-clang
1195     - .clang7-template
1196   stage: release-build
1197   variables:
1198     BUILD_DIR: release-builds-clang
1199   needs:
1200     - job: configure-clang-7-release
1201       artifacts: true
1202   only:
1203     refs:
1204       - web
1205       - schedules
1206       - triggers
1207     variables:
1208       - $GROMACS_RELEASE
1209
1210 build-clang-7-gmxapi-release:
1211   extends:
1212     - .build-clang
1213     - .gmxapi-extra-installs
1214     - .clang7-template
1215   stage: release-build
1216   variables:
1217     BUILD_DIR: release-builds-clang
1218   needs:
1219     - job: configure-clang-7-gmxapi-release
1220       artifacts: true
1221   only:
1222     refs:
1223       - web
1224       - schedules
1225       - triggers
1226     variables:
1227       - $GROMACS_RELEASE
1228
1229 build-clang-8-release:
1230   extends:
1231     - .build-clang
1232     - .clang8-template
1233   stage: release-build
1234   variables:
1235     BUILD_DIR: release-builds-clang
1236   needs:
1237     - job: configure-clang-8-release
1238       artifacts: true
1239   only:
1240     refs:
1241       - web
1242       - schedules
1243       - triggers
1244     variables:
1245       - $GROMACS_RELEASE
1246
1247 webpage-binary-release:
1248   extends:
1249     - .build-docs-binary
1250     - .gmxapi-extra-installs
1251   stage: release-build
1252   needs:
1253     - job: webpage-configure-release
1254       artifacts: true
1255   variables:
1256     BUILD_DIR: release-doc-builds
1257   only:
1258     refs:
1259       - triggers
1260       - web
1261       - schedules
1262     variables:
1263       - $GROMACS_RELEASE
1264
1265 test-gcc-7-release:
1266   extends:
1267     - .test-gcc
1268     - .gcc7-template
1269   stage: release-tests
1270   variables:
1271     BUILD_DIR: release-builds-gcc
1272   needs:
1273     - job: configure-gcc-7-release
1274       artifacts: true
1275     - job: build-gcc-7-release
1276       artifacts: true
1277   only:
1278     refs:
1279       - triggers
1280       - web
1281       - schedules
1282     variables:
1283       - $GROMACS_RELEASE
1284
1285 test-gcc-7-gmxapi-release:
1286   extends:
1287     - .test-gcc
1288     - .gmxapi-extra-installs
1289     - .gcc7-template
1290   stage: release-tests
1291   variables:
1292     BUILD_DIR: release-builds-gcc
1293   needs:
1294     - job: configure-gcc-7-gmxapi-release
1295       artifacts: true
1296     - job: build-gcc-7-gmxapi-release
1297       artifacts: true
1298   only:
1299     refs:
1300       - triggers
1301       - web
1302       - schedules
1303     variables:
1304       - $GROMACS_RELEASE
1305
1306 test-gcc-7-double-release:
1307   extends:
1308     - .test-gcc
1309     - .gcc7-template
1310   stage: release-tests
1311   variables:
1312     BUILD_DIR: release-builds-gcc
1313   needs:
1314     - job: configure-gcc-7-double-release
1315       artifacts: true
1316     - job: build-gcc-7-double-release
1317       artifacts: true
1318   only:
1319     refs:
1320       - triggers
1321       - web
1322       - schedules
1323     variables:
1324       - $GROMACS_RELEASE
1325
1326 test-gcc-8-release:
1327   extends:
1328     - .test-gcc
1329     - .gcc8-template
1330   stage: release-tests
1331   variables:
1332     BUILD_DIR: release-builds-gcc
1333   needs:
1334     - job: configure-gcc-8-release
1335       artifacts: true
1336     - job: build-gcc-8-release
1337       artifacts: true
1338   only:
1339     refs:
1340       - triggers
1341       - web
1342       - schedules
1343     variables:
1344       - $GROMACS_RELEASE
1345
1346 test-clang-7-release:
1347   extends:
1348     - .test-clang
1349     - .clang7-template
1350   stage: release-tests
1351   variables:
1352     BUILD_DIR: release-builds-clang
1353   needs:
1354     - job: configure-clang-7-release
1355       artifacts: true
1356     - job: build-clang-7-release
1357       artifacts: true
1358   only:
1359     refs:
1360       - triggers
1361       - web
1362       - schedules
1363     variables:
1364       - $GROMACS_RELEASE
1365
1366 test-clang-7-gmxapi-release:
1367   extends:
1368     - .test-clang
1369     - .gmxapi-extra-installs
1370     - .clang7-template
1371   stage: release-tests
1372   variables:
1373     BUILD_DIR: release-builds-clang
1374   needs:
1375     - job: configure-clang-7-gmxapi-release
1376       artifacts: true
1377     - job: build-clang-7-gmxapi-release
1378       artifacts: true
1379   only:
1380     refs:
1381       - triggers
1382       - web
1383       - schedules
1384     variables:
1385       - $GROMACS_RELEASE
1386
1387 test-clang-8-release:
1388   extends:
1389     - .test-clang
1390     - .clang8-template
1391   stage: release-tests
1392   variables:
1393     BUILD_DIR: release-builds-clang
1394   needs:
1395     - job: configure-clang-8-release
1396       artifacts: true
1397     - job: build-clang-8-release
1398       artifacts: true
1399   only:
1400     refs:
1401       - triggers
1402       - web
1403       - schedules
1404     variables:
1405       - $GROMACS_RELEASE
1406
1407 webpage-build-release:
1408   extends:
1409     - .build-docs-webpage
1410     - .configure-gmxapi-template
1411   dependencies:
1412     - webpage-binary-release
1413     - webpage-configure-release
1414   stage: release-prepare-deploy
1415   only:
1416     refs:
1417       - web
1418       - schedules
1419       - triggers
1420     variables:
1421       - $GROMACS_RELEASE
1422   variables:
1423     BUILD_DIR: release-doc-builds
1424
1425 webpage-archive-release:
1426   extends:
1427     - .build-docs-webpage
1428     - .configure-gmxapi-template
1429   stage: release-deploy
1430   only:
1431     refs:
1432       - web
1433       - triggers
1434       - schedules
1435     variables:
1436       - $GROMACS_RELEASE
1437   dependencies:
1438     - webpage-build-release
1439     - package-archive-release
1440     - package-regressiontests-release
1441   variables:
1442     BUILD_DIR: release-doc-builds
1443   script:
1444     - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
1445   artifacts:
1446     when: always
1447     paths:
1448       - webpage.tar.gz
1449       - gromacs-*tar.gz
1450       - regressiontests-*tar.gz
1451